ASTRAL
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smirarab
Accurate Species TRee ALgorithm
Hi： I got the file 'freqQuad.csv' when i use '-t 32', it seems that the best way to show the result of 'freqQuad.csv' is the R script 'freqQuadVisualization.R' used by...
**Describe the bug** Its a java error Error: Unable to initialize main class phylonet.coalescent.CommandLine Caused by: java.lang.NoClassDefFoundError: com/martiansoftware/jsap/StringParser **To Reproduce** `java -Xmx60g -jar astral.5.7.1.jar -i mlbest.trees -b mlboot.txt -o species_boot.trees...
Dr. Mirarab, I am running ASTRAL on several large datasets that include multi-copy gene families. Overall, results have been very consistent, but I'm getting one result that is surprising. If...
**Describe the bug & to reproduce** When running `-t 16` or `-t 32`, ASTRAL appears to complete but `freqQuad.csv` is completely empty. The only error reported is: ``` Final quartet...
Hello, Professor, I am installing the astral-mp, my command is : git clone https://github.com/smirarab/ASTRAL/ cd ASTRAL git checkout MP ./make.sh java -D"java.library.path=/data/01/user157/software/ASTRAL/lib/" -jar native_library_tester.jar The path of lib is current...
**Describe the bug** Should refuse to work given three taxa in input. **Additional context** See issue #76
Hello, Iam trying to run bootstrap analyses with astral on a large dataset (~14000 loci). Unfortunatly the run failed with error message from java which seems related to memory issue?...
Hello, Thank you for your very well documented and fast software! I realize that I'm covering some old ground with a question regarding terminal branch lengths, but I was wondering...
Taxon name restrictions are not documented sufficiently anywhere.
Branch annotations can be made into standard formats. Examples are: - Phyloch - ? Also, annotations can be written out as .csv files. Thanks Siavash