Sam Minot

icon indicating a website link https://minot.bio icon indicating an email [email protected]

icon company @FredHutch icon location Seattle, WA icon location Microbiome scientist at the Fred Hutchinson Cancer Research Center

Results 5 issues of Sam Minot

Create Dockerfile

Adding a Dockerfile to help with testing and execution

Public docker image?

2 comment

What is the recommended public docker image for SNAP? The [biocontainers repo](https://quay.io/repository/biocontainers/snap) hasn't been updated in a while.

Configure refpackage.nf for the BASH Workbench

Here's an example of how we could configure the individual components of maliampi in the BASH Workbench. I just did this for refpackage.nf, but I thought this would be a...

Using scikit-bio in Pyodide

5 comment

I'm very interested in using scikit-bio from inside Pyodide. This is not possible at the moment due to the lack of pure python wheels in PyPI or a corresponding Pyodide...

Add percent identity

Summarize the percent identity of the alignments assigned to each reference.

enhancement