Svenja Mehringer

Hi @leannmlindsey, Your workaround works well :) another way would be (similar to @eseilers approach): ``` typename decltype(file_in)::sequence_type sequences{}; // takes the type from the file ``` and then the...

Might be of interest when discussing this https://github.com/seqan/product_backlog/issues/388

Hi Pierre, hi Téo, thanks a lot for your quick replies! This answers all of my questions. We were on the right track then but wanted to make sure to...

I already stumbled over the first issue: In the [example](https://github.com/tlemane/kmtricks/wiki/Index-example) one should build the index after `kmtricks pipeline` with ``` kmtricks index ... ``` But in version v1.2.1 the subcommand...

Hi there, so the kmtricks pipeline seems to have troubles. Data is ~100GB (uncompressed), 25'000 files, RefSeq genomes. Build command: ``` # Build /project/archive-index-data/software/bin/kmtricks pipeline --file ${KM_DIR}/data.fof \ --run-dir ${KM_DIR}/kmtricks_index...

Hi there, thanks for the response. Scaling down the number of threads from 32 to 16 worked for now. What does ``` query "[name]40049279" contains no searchable smers ``` mean?...

Sorry, my fault I think. I gave kmtricks a FASTQ file instead of FASTA (I noticed that only every 4th query did not have problems). Runnning it with FASTA again...

Hi @mariaelf97, thanks for reaching out. The error message basically tells you whats going wrong. You are trying to simulate paired-end sequencing data with reads of length 500 but your...

Hi @Lionward, your issue seems to something else. The error says that you are trying to read BAM, but there is no ZLIB available. Check that Zlib is installed on...

Hi @notestaff, thanks a lot for the feedback! Indeed we are missing documentation on the header functionality and a tutorial would also be helpful. We'll see what we can manage...