Svenja Mehringer

> Ahh, I'm sorry to hear that :slightly_frowning_face:. Considering that I will without a doubt be in need of a MAF parser for my PhD, I would be happy to...

> Can you go through the documentation and `seqan2`->`SeqAn2`, `seqan3`->`SeqAn3`, `seqan`->`SeqAn`, where not used as part of a type. Done. (also not if used as a variable name etc. just...

> * Make the return type an actual alignment_result and store the alignment etc. inside of it. Yes, already a follow up! > * We might be able to build...

the MSA is not used right now. Before having an actual use case we will not pull in the MSA module

Hi @JanSiebert, thanks for your interest in SeqAn! > Does dnaX_vector allocate at least 1 byte per nucleotide [...]? Yes. Since the `dnaX::rank_type` is at least `uint8_t` (alphabets are stored...

Hi @jay-tux, unfortunately we do not support BAM indexing yet in seqan3. I can't give a good time estimate on when we will be able to implement this feature. I...

I'm very sorry for the late reply! @Irallia Could you point them to the bam index library of Josh you are using in IgenVar?

I checked off the ones I did :white_check_mark:

@jwinkler Since Mitra is not working on Seqan currently, could check the documentation? :)

Although from @marehr's last comment it doesn't feel like a good solution to just patch it, I would have to look deeper into this, which `#ifdef` would you propose? An...