Goo
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smegason
Goo is a Blender library for modeling biological cells, tissues, and embryos
Users can simply run the setup_world function instead of manually enabling in the preferences the 'add_mesh_extra_objects' add-on during first installation. https://github.com/smegason/Goo/blob/3c6d8f5f85da776a22e385a88feba4d5b0e74b71/scripts/modules/goo/goo.py#L1887 If other add-ons become needed to run Goo, they...
When opening blender (3.2 or 3.3) from VSC, VSC should be opened as administrator. Otherwise, blender crashes. To add to the documentation.
that would make it automatically load and wouldn't require user to change preferences
We currently have an app (app.py) that runs outside of Goo to make a script. Minimally this could be run inside of Blender. There may also be ways to make...
Goal is to start with in toto image set, segment cells at one time point to make a label image stack, and convert the 3d image into a set of...
Goal is to create an accurate representation of all the cell divisions and movements during zebrafish development. A "kinetic model" is a reverse, computer recreation of development based on segmentation...
Idea for driving biological problem- make sheet of cells that are connected at apical junctions and basement membrane.
Idea for driving biological problem 2 cell types with different adhesive affinities for each other. The cells start off mixed. How do they sort into groups of the same cell...
Idea for driving biological problem Simulate a field of cells undergoing convergent extension by having differential tension on cell membranes of different orientations (planar cell polarity)
Have yolk and first cell of zebrafish. Simulate cell dividing along long axis for first 12 divisions.