Santiago Marco-Sola

Hi, Sorry for the late reply. This ticket skipped my mind. I could, but computing the Hamming distance is very simple. The question is, would it be really useful for...

Sorry for the late reply (I was about to send this message, and then it slipped my mind...). (1) R bindings Yes, sure, that would be awesome. At this moment,...

Sorry for the late reply. I think I understand the situation you are presenting. In the case of the WFA2-lib, it calls the function [wavefront_compute_trim_ends()](https://github.com/smarco/BiWFA-paper/blob/main/wavefront/wavefront_compute.c#L371) every time [a new wavefront...

Hi, Perhaps this ticket can help you out [HERE](https://github.com/smarco/WFA2-lib/issues/18).  Give it a go and let me know if I can help. Best,

Hi, If the message "GEM Index '/g/boulard/Projects/MULTIREADS/singularities/gem3/mmusculus_v38.gem' was successfully built in 9.953 min." is shown, that means that the index was built correctly but the application during clean-up and termination...

Well, this certainly helps a lot. Thanks for such a detailed report; I really appreciate it. Best,

@descostesn not yet. I am quite overloaded at the moment. Accept my apologies. Nevertheless, I should be able to produce a patch soon. Sorry for the inconvenience. All the best,

Hi, @SaurabhKalikar I would like to join in the congratulations. Great job! However, I too would like to know the logic behind these lines from [ipbwt_rmi.h](https://github.com/IntelLabs/Trans-Omics-Acceleration-Library/blob/f4cdcf316d80292e8b57860dd2632a27f3efd7ff/src/LISA-FMI/ipbwt_rmi.h#L812) ```C ipbwt_t ipb_x_key_low =...

Yes. I implemented it, but never had the time to test it properly. Regular WFA with end-free works smoothly and has been extensively tested. In the case of biWFA (memory_mode="biwfa"),...

Thanks, @RagnarGrootKoerkamp, for the help. There are no major changes in the library (just a few bug fixes). However, the development continues, and it is our aim to keep improving...