Sebastian Lobentanzer

Build OpenTargets community knowledge graph prototype using publicly available data (Parquet format flat file downloads).

uniprot_sprot_human.dat.gz at https://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/taxonomic_divisions/

https://github.com/IGVF-DACC/igvf-catalog/blob/main/data/adapters/coxpresdb_adapter.py

https://github.com/IGVF-DACC/igvf-catalog/blob/main/data/adapters/cellosaurus_ontology_adapter.py

An adapter that uses graphQL to query and manipulate GitHub objects. E.g. https://api.github.com/repos/biocypher/biocypher/issues Implementations in https://github.com/biocypher/meta-graph/tree/main/meta_graph/adapters and https://github.com/saezlab/scheduling/tree/main/scheduling/adapters. To be consolidated and generalised.