Sebastian Lobentanzer

Ontoweaver publication accepted at 2 conferences

Hi @willy20040711, this appears to be a problem with your python env, as in this part of the error: ``` Output: Found existing installation: numpy 1.26.0 ERROR: Cannot uninstall numpy...

Hi @marco-brandizi, Thanks for your request, this is absolutely the right place to ask. :) You are right in assuming that there are no significant parallelisation functions in BioCypher. All...

Hi @a1012, Thanks for the question. As described in the [Ontology Tutorial](https://biocypher.org/tutorial-ontology.html#hybridising-ontologies), you can point BioCypher to any (valid) OWL file using the YAML configuration. In your case, you need...

Did you go through the tutorial? You need a schema configuration, which is not found.

No, the ttl file is used instead of the Biolink ontology. The schema configuration is used to map your data inputs to the ontology, as described [here](https://biocypher.org/tutorial.html#section-1-adding-data), [here](https://biocypher.org/tutorial-ontology.html#using-ontologies-plain-biolink), [here](https://biocypher.org/tutorial-adapter.html#passing-the-data), and...

@a1012 can you tell me what your error is?

This indicates that the OWL syntax is not correct. you can try renaming your file with the suffix `.ttl` and see if that already fixes it. If not, you need...

Hi @a1012, > I have article on biochemical industry which is in pdf format and want to generate ontology out of it. I am not sure I understand what you...

Hi @a1012, thanks for your continued interest. What you are asking is described in the documentation, please try to follow that first. GitHub issues are meant to be used for...