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Published 20 hours ago • verified publisher icon skovaka

Running Uncalled using Flongle flow cell

Open Nirmal2310 opened this issue 2 years ago • 2 comments

Hi @skovaka , Thank you for developing such a great tool for adaptive sampling. However I have a doubt regarding using this tool while running flongle flow cells. I had found one issue stating to change the last channel to 126 but couldn't find the similar function in any of the script. The issue is mention here: https://github.com/skovaka/UNCALLED/issues/9 I am getting the same error of last channel is too big. Can you please tell me what parameter should I change while running uncalled with flongle flow cells?
Thank you so much for your help.

Nirmal2310 avatar Jun 03 '22 10:06 Nirmal2310

I believe setting --num-channels 126 should work. Let me know if it does and I'll update the README. Thanks!

skovaka avatar Jun 06 '22 17:06 skovaka

Ok I will try this out and get back to you. Thank you for such a quick response.

Nirmal2310 avatar Jun 07 '22 11:06 Nirmal2310