Sergey Koren
Sergey Koren
Identify regions where the haplotypes only differ by homopolymers count and so are invisible in compressed space. These are likely to cause consensus issues when the two haplotypes are mixed...
- use extension smk instead of sm for syntax highlights on GitHub - check the new feature that supports using existing bash scripts rather than inlining them in the smk...
Right now, we do not split reads so the full ONT reads are included even if the patch is much shorter. This can lead to issues when the patch is...
Some recurrent complex patterns appears in HiFi graphs from chrX (see attached image). Explore what genomic structure is causing this. The ONT resolution currently fails because all paths are very...
I made a few changes when getting this working on our cluster. Mainly, it uses the script path to call the other python script rather than assuming they are locally...
I'm trying to run veritymap on an HG002 assembly with HiFi data (4 cells, about 35x). The problem is I end up with a very tiny sam file and most...
Since snakemake relies on timestamps to decide what needs to re-run, any changes to the initial assembly (the --assembly option) for the --paths pipeline can cause verkko to restart from...
Getting ready for next release, testing to fix package build that was broken after last version release.