Sehrish Kanwal

@jamesuanhoro - thank you. I'll ping you again if we haven't found a reviewer by May.

Hi @jamesuanhoro - It'd be appreciated if you can review this submission in May as we haven't had a response from other reviewers yet? I'll open up a review issue...

> Update the "Tip: Tidyverse" box in _episodes_rmd/13-dplyr.Rmd to mention that the tidyverse packages are designed to work gracefully together and with the pipe? This has been attempted in https://github.com/swcarpentry/r-novice-gapminder/pull/823#pullrequestreview-1376681325...

Closing the issue. Please feel free to reopen if this needs to be re-discussed.

Happy for this to be merged. Thanks @tobyhodges and @milanmlft

Thanks for the response, Liguo. > The "Reference_Allele" will be updated to the new reference genome (hg38 in your case) after liftover. That part makes sense. What I am unsure...

Many thanks @liguowang - updating order of columns in my original data has resolved the issue. Can I ask another question - how is CrossMap handling liftover of insertion in...

>"-/T" is NOT the standard way to represent an insertion (at least according to VCF's specification; maybe MAF has its own rule, which I am not sure). Indeed MAF has...

Thanks a lot for the prompt response. We had come across the grolar script earlier and tried this today to get results (and are almost there). Now, testing the clinker...

Hi Breon, Almost there with the clinker pipeline. Getting a small issue at `Stage prepare_plot`. Seems to me that access request to BioMart service is for some reason failing. Attaching...