Stephen Fleming

Local pip install fails

1

If I run ```console git clone [email protected]:broadinstitute/cromshell.git cd cromshell pip install -e . ``` it fails to install. I see this ```console Obtaining file:///Users/sfleming/Documents/Github/cromshell Installing build dependencies ... done Checking...

Feature request: "preempt" job (as opposed to "abort")

11

@dalessioluca might have input here as well. I am looking for the ability to programmatically preempt a running job using a `cromshell` command. I do not want to abort the...

I am using `checkpointFile` in the `runtime` section of a WDL `task`. I accidentally included a space in the checkpoint file name, and I see in the logs that this...

I have here a little demo that appears to show that `pymde.preserve_neighbors` uses cuda only if the user specifies `device="cuda"` and _not_ if the user specifies `device=torch.device("cuda")`. While I see...

Theoretical question about scaling to an arbitrary number of points

2

I am wondering if the following line of thinking leads anywhere, but please ignore if it doesn't. :) Let's say we have very large dataset that will not fit in...