Sjoerd de Vries
Sjoerd de Vries
See https://github.com/sjdv1982/seamless/issues/34 See scripts/serve_graph.py See tests/highlevel/load_graph Things to do for graph management ================================= (None of them are very urgent) - Adapt graph format wrt structured cells. Do we need to...
Reactor start and stop side effects =================================== The reactor start and stop code may produce side effects. To work properly, Seamless requires idempotency. For example, of the event chains below,...
Various plans to use the GPU with Seamless. General ======= NOTE: the GPU is and will be a can-of-worms for reproducibility Part of this is the unordered computation itself (see...
remote peer id The purpose of this is to pass around in a remote (communion) request the communion peer ID of the peer that issued the original request. This is...
Great tool! But the following isn't quite working right... Schema: { "$schema": "http://json-schema.org/schema#", "type": "object", "properties": { "x": {"type":"number"}, "y": {"type":"number"}, "z": {"type":"number"} }, "required": ["x", "y", "z"] } JSON...
Hello, We were very happy to see our project `(projects/40): Interactive workflows to model ssRNA-protein interactions, applied to SARS-Cov-2 targets` in the list of selected BioHackathon projects. Unfortunately, the project...
### Bug description The repo2docker deployment on mybinder.org fails to build a rather minimal python 3.8 environment. There is no problem when I run jupyter-repo2docker locally. #### Expected behaviour The...
but the actual API seems to be `loky.backend.context.set_start_method`
`seamless.direct.transformer` wraps a function inside a `DirectTransformer` object, which launches direct transformations (`seamless.direct.Transformation`) when called. In addition, direct transformations can also be created from unbound high-level Transformer objects (Transformer.get_transformation). Nested...
`tf.foo = ...` will not work if `foo` is a pin of celltype `bytes` . ( `tf.foo = ctx.foo` does work correctly) This makes sense since bytes pin checksums are...