Simple example of Nextflow pipeline using SHPC

[marcodelapierre]

Hi @vsoch , I finally had the chance to work on this one today!

Look at this: https://github.com/marcodelapierre/demo-shpc-nf

It's derived from the RNAseq pipeline that the Nextflow authors use as example.

It requires singularity, shpc and modules (documentation to install them not included). The README shows how to run it both with singularity and shpc container modules; in the latter case, the required container installations are shown, too.

I hope it can be useful for you, too, feel free to use,adapt, re-use, ask..!

Marco

[vsoch]

Love this! I'm going to make some time over the weekend to test it out.