Justin Sing
Justin Sing
Implement a loader for targeted extraction of raw .d data using OpenTims
Hello, When loading weights from a pretrained PyTorch model using the `VarBuilder::get` method, I've noticed that most of the loaded weights for different layers match correctly, except for a 2...
# In Draft ## TODOs - [ ] implement as part of GUI - [ ] add unit tests - [ ] add/update documentation # Description Implement feature to visualize...
Add visualization tools for debug files produced from OpenSwathWorflow (i.e. trafoXML etc)
### **User description** ## Description Updated OpenSwathWorkflow IonMobilityScoring to use the KERNEL Mobilogram datastructure. Previously, IonMobilityScoring used an _ad hoc_ datastructure at the time of implementing ion mobility scoring. ##...
This PR adds the option to generate an interactive html report that summarizes the results from Sage, and plots some QC plots for inspecting the scoring and correlation of predicted...
The run inference method may fail if there are multiple extensions. (i.e. with the sqMass filenames, sometimes have name.chrom.sqMass. 
## Proteomics Dataset 16 runs, ~32K precursors (target + decoy), ~196K transitions, ~1.4M precursor features (peak-groups) ##### Command ``` /usr/bin/time pyprophet score --in merged_osw.parquet --level ms1ms2 --classifier SVM --xeval_num_iter 3...
The current pyopenms_viz implementation was built with the idea of extending pandas `.plot` method. It would be nice to add support for polars dataframes as well. There is an initial...
This is a draft PR to see how feasible it is to add support for polars dataframes. There are two approaches I can think of to do this. 1. use...