Sidney Bell

Set up continuous integration

1

Explore using github actions for this, once the basic test suite is ready

Add methods for: `__print__` `__sort__` `__reverse__` `__repr__`

- [ ] Make demo tree structure in newick, nexus and json formats w/ and w/o `absoluteTime` and `attributes` - [ ] Test that all three formats can be read...

- [ ] Short description of what it does - [ ] Bulletpoint list of key features - [ ] A couple of examples - [ ] Links to additional...

https://opensource.com/life/16/3/contributor-guidelines-template-and-tips

Odd pandas error coming from augur export

7

### Current Behavior ``` augur export v2 --tree tree.nwk --metadata ../data/hcv-meta.tsv --node-data ./branch_lengths.json ./traits.json --lat-longs ../config/lat_longs.tsv --auspice-config ../config/auspice_config.json --output ./hcv.json ERROR: DataFrame index must be unique for orient='index'. ``` Initial...

Web USHeR -- dropdown to monkeypox not working

4

Reverts the value to 'SARS-CoV-2' immediately after selection. If you'll point me in the right direction I'm happy to help fix this one if you'd like :) Chrome Version 105.0.5195.125...

Enable 'lite' version of QC analysis and mutations without a `tree.json` file

3

For many pathogens, it would be super useful to be able to do at least a 'lite' version of QC analysis and mutation calling with just the reference sequence /...