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Shared Motif for Clusters after Phenograph clustering

Open jkbenotmane opened this issue 2 years ago • 0 comments

Hello Mr. Sidhom, thank you for creating DeepTCR! I am using the supervised Sequence Classifier, including HLA Supertypes for Samples from different Patients and Treatments. My Question now is: Is it possible to extract shared Motifs for each Cluster that are common? As DTCRSS.Representative_Sequences() as well as DTCR_SS.Motif_Identification() do extract explicitly the Sample specific Motifs if I understood correctly ? Thank you in Advance for your help!

jkbenotmane avatar May 11 '22 15:05 jkbenotmane