Applying to contigs or chromosome-level scaffolds

[OZTaekOppa]

Hi,

Thank you for sharing this tool with the community. After reading the manual and issues, I would like to use DipAsm for my genome projects.

FYI, Input data: PacBio (Sequel) with ~200X coverage (raw read N50 = ~14Kb) Assembled contigs: ~1,000 cotigs (N50 = ~3Mb) Chromosome-level scaffolds: 20 Chromosomes with Pore-C data (PromethION) Trio data: Not available

Given the circumstances, I would like to ask your professional opinions on which stage would be better to use DipAsm 1) "Assembled contigs" or 2) "Chromosome-level scaffolds"?

Thank you in advance!