DipAsm
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shilpagarg
Dear Shilpa Garg: The paper "Chromosome-scale, haplotype-resolved assembly of human genomes" described there was a step that grouping and ordering contigs into scaffolds with Hi-C data using 3D-DNA . “We...
Hi, Thanks for this useful tool and I met with a problem when I "bash test.sh | bash", and the error is "CommandNotFoundError: Your shell has not been properly configured...
Hi, Thank you for sharing this tool with the community. After reading the manual and issues, I would like to use DipAsm for my genome projects. FYI, Input data: PacBio...
I use these codes to install dipasm: ``` mkdir -p dipasm cd dipasm git clone https://github.com/shilpagarg/DipAsm.git cd DipAsm/docker docker build -t dipasm . cd ../../.. docker run -it --rm -v...
Hi, when I using pstools_1 as #16 `./pstools_1 haplotype_scaffold -t 15 scaff_connections.txt pred_haplotypes.fa /public/home/pxxiao/practice_self/mjw`, this error occurred: ``` start main All above 5M: 0 All above 1.5M: 0 Segmentation fault...
I would like to install the "DipAsm" ; however it is not possible for me to use Docker on our servers directly. Therefore, we have to use docker file through...
Dear author The paper "Accurate chromosome-scale haplotype-resolved assembly of human genomes " described there was a step that grouping and ordering contigs into scaffolds with Hi-C data using HiRise/3D between...
