Ryohei SHIBATA

icon indicating a website link http://pediatricsurgery.site icon indicating an email [email protected]

icon company EMNet, MGH icon location Boston, MA, USA icon location Pediatric surgeon also intereted in Bioinformatics.

Results 14 comments of Ryohei SHIBATA

FileNotFoundError: [Errno 2] No such file or directory: \'snakemake\'\n'

Thanks!!! ```yml #Config file for testing eukdetect. Edit your paths where specified eukdetect_dir: "/PATH/EukDetect" output_dir: "/PATH/EukDetect/tests" #directory where output should be written paired_end: true #true or false fwd_suffix: "_R1.fastq.gz" #filename...

FileNotFoundError: [Errno 2] No such file or directory: \'snakemake\'\n'

Sorry, `PATH` includes server and my username, which I got using `pwd` or `realpath`. `pwd` at home directory returned ``` /SERVER/USERNAME ``` and EukDetect located ``` /SERVER/USERNAME/EukDetect ``` Then, more...

FileNotFoundError: [Errno 2] No such file or directory: \'snakemake\'\n'

Hi Abigail, Thanks!!! I think it was the problem just when I copied and pasted here. But, I re-download `configfile_for_tests.yml` and edit the paths without ANY edits outside of double...

FileNotFoundError: [Errno 2] No such file or directory: \'snakemake\'\n'

Hi Abigail, Finally, `python tests/test_eukdetect.py` worked!!! I put "test" as a value of key `sample:`, which is because of my lack of understanding YAML file, and delete it. I really...