Ryohei SHIBATA comments

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                                            Ryohei SHIBATA

FileNotFoundError: [Errno 2] No such file or directory: \'snakemake\'\n'

Hi Abigail, Thank you very much for your kind and rapid instruction! As you told me, `snakemake` was not installed in my environment and, after the installation, I got the...

FileNotFoundError: [Errno 2] No such file or directory: \'snakemake\'\n'

Hi Abigail, Thanks, I've checked again my codes and found some problems in Run of "Create conda environment and install EukDetect". Please let me confirm them. ```python conda env update...

FileNotFoundError: [Errno 2] No such file or directory: \'snakemake\'\n'

Hi Abigail, Thank you very much. I had used conda (anaconda3 and miniconda3 were installed), so uninstalled them and re-install only miniconda3 following the instruction in the conda website. And...

FileNotFoundError: [Errno 2] No such file or directory: \'snakemake\'\n'

Hi Abigail, Sorry for the delay. Yes, `conda install mamba` worked in my environment. ```sh (base) shibataryohei@ryoheis-mbp-2 EukDetect % conda install mamba Collecting package metadata (current_repodata.json): done Solving environment: done...

FileNotFoundError: [Errno 2] No such file or directory: \'snakemake\'\n'

Hi Abigail, Thank you very much. But, `mamba env update --name eukdetect -f environment.yml` returned similar error messages. I'm using a Mac with M1 Apple silicon, can these errors be...

FileNotFoundError: [Errno 2] No such file or directory: \'snakemake\'\n'

Hi Abigail, After my long journey, I found a post in [stackoverflow](https://stackoverflow.com/questions/49154899/resolvepackagenotfound-create-env-using-conda-and-yml-file-on-macos). According this post, I ran `conda env export --no-builds > environment.yml`, then `conda env update --name eukdetect environment.yml`...

FileNotFoundError: [Errno 2] No such file or directory: \'snakemake\'\n'

Hi Abigail, I tried my Intel MacBook Pro environment (macOS Monterey 12.6.1, MacBook Pro 16-inch 2019) and newly installed miniconda3. Following your instruction, again, `conda env update --name eukdetect environment.yml`...

FileNotFoundError: [Errno 2] No such file or directory: \'snakemake\'\n'

Hi Abigail, Sorry for the delay and I appreciated your kindness. However, `conda env update --name eukdetect_macos -f macos_env.yml` has returned similar error messages. ```sh (base) shibataryohei@ryoheis-mbp-2 EukDetect % conda...

FileNotFoundError: [Errno 2] No such file or directory: \'snakemake\'\n'

Hi Abigail, In my linux environment (Ubuntu in WSL2), EukDetect has successfully installed. However, there is still problem in `python tests/test_eukdetect.py`. I got the error message below. ``` .FFF. ======================================================================...

FileNotFoundError: [Errno 2] No such file or directory: \'snakemake\'\n'

Hi Abigail, Thanks for updating. I have changed paths in the yml file using absolute paths without ~, but I'm still in the error. Now I'm using Linux-based server environment....