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[Suggestion] Use score calibration when identifying proviruses and plasmids

Open apcamargo opened this issue 11 months ago • 2 comments

Just a suggestion for the database build step. Since the sample size is pretty big, it's worth using the --enable-score-calibration in geNomad. This parameter substantially improves the classification accuracy and should improve the reliability of the detection (see Supplementary Figure 5D here).

apcamargo avatar Jul 20 '23 14:07 apcamargo