Problem with HDF5 path?

[ellick53]

Hello,

And thanks for sharing your work. I'm trying to run your network, replaced paths in davis_path.txt, seq_t5_n1.txt. I also tried replacing paths in test.prototxt. Unfortunately, there is a weird error about an unknown path. Could you help me? Thanks!

Load net... WARNING: Logging before InitGoogleLogging() is written to STDERR W0122 16:14:50.405848 90842 _caffe.cpp:135] DEPRECATION WARNING - deprecated use of Python interface W0122 16:14:50.405881 90842 _caffe.cpp:136] Use this instead (with the named "weights" parameter): W0122 16:14:50.405889 90842 _caffe.cpp:138] Net('/home/user/PDB/test.prototxt', 1, weights='/home/user/PDB/model/pdb-convlstm.caffemodel') I0122 16:14:50.408905 90842 net.cpp:51] Initializing net from parameters: name: "May_lstm" state { phase: TEST level: 0 }

[...]

layer { name: "conv4_6_1x1_reduce" type: "Convolution" bottom: "conv I0122 16:19:14.291399 91324 layer_factory.hpp:77] Creating layer data I0122 16:19:14.291419 91324 net.cpp:84] Creating Layer data I0122 16:19:14.291422 91324 net.cpp:380] data -> data I0122 16:19:14.291438 91324 net.cpp:380] data -> fakelabel I0122 16:19:14.291450 91324 image_data_layer.cpp:38] Opening file /home/user/PDB/my_path.txt I0122 16:19:14.291590 91324 image_data_layer.cpp:63] A total of 588 images. I0122 16:19:14.373279 91324 image_data_layer.cpp:90] output data size: 5,3,473,473 I0122 16:19:14.396646 91324 net.cpp:122] Setting up data I0122 16:19:14.396672 91324 net.cpp:129] Top shape: 5 3 473 473 (3355935) I0122 16:19:14.396682 91324 net.cpp:129] Top shape: 5 (5) I0122 16:19:14.396685 91324 net.cpp:137] Memory required for data: 13423760 I0122 16:19:14.396690 91324 layer_factory.hpp:77] Creating layer clip_markers I0122 16:19:14.396708 91324 net.cpp:84] Creating Layer clip_markers I0122 16:19:14.396713 91324 net.cpp:380] clip_markers -> reshape-cm I0122 16:19:14.396723 91324 hdf5_data_layer.cpp:80] Loading list of HDF5 filenames from: /home/user/PDB/maycaffe-convlstm/models/seq_t5_n1.h5 I0122 16:19:14.396755 91324 hdf5_data_layer.cpp:94] Number of HDF5 files: 6 HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) thread 139706439980672: #000: ../../../src/H5F.c line 579 in H5Fopen(): unable to open file major: File accessibilty minor: Unable to open file #001: ../../../src/H5Fint.c line 1100 in H5F_open(): unable to open file: time = Wed Jan 22 16:19:14 2020 , name = '�HDF', tent_flags = 0 major: File accessibilty minor: Unable to open file #002: ../../../src/H5FD.c line 812 in H5FD_open(): open failed major: Virtual File Layer minor: Unable to initialize object #003: ../../../src/H5FDsec2.c line 348 in H5FD_sec2_open(): unable to open file: name = '�HDF', errno = 2, error message = 'No such file or directory', flags = 0, o_flags = 0 major: File accessibilty minor: Unable to open file F0122 16:19:14.397401 91324 hdf5_data_layer.cpp:31] Failed opening HDF5 file: �HDF *** Check failure stack trace: *** Abandon (core dumped)