HiFiAdapterFilt
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sheinasim
Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
Does HiFiAdapterFilt apply to the HiFi data derived from Revio platform?
What are the typical run times for the pipeline? I have a 40GB fastq and I expect it could be anywhere from 5-15 hours, based on transfer rates.
Hi! I am trying to run this tool on my PacBio reads but I get a general error from blast (like if some options are not compatible) that makes me...
Thanks for this nice tool. Just a quick question. Does HiFiAdapterFilt perform better if I run it on one large input file? Or would it be better to split my...
I encountered an error: BLAST Database error: No alias or index file found for nucleotide database [/pacbio_vectors_db] in search path [/home/liangc/Downloads/PacBio:/scratch/ncbi_blast+/db:] To solve this problem, I have tried two approaches...
these two temporary fasta and fastq files have been written in `read_path_str`, not in `outdir`
Sheina, I created this Dockerfile to be used with github actions to automagically (or push button) create a docker container. Dave Ps. One of the ways that I release containers...
