shawn

Hi @firatuyulur Thanks for sending me the file formats. I think I found the problem. PePr does not read pileup BED files, it only process BED file (6+) which has...

sorry I have been super busy wrapping up two other projects so there is no progress at the moment, and I probably won't be able to get to it for...

Hi Ray, could you send me an example of it so I know what it is like? On Wednesday, June 15, 2016, Raymond Cavalcante [email protected] wrote: > I've observed that...

I find the easiest way is to use `bedtools subtract -a chip1 -b chip2` to trim the edges.

Here it is. Thanks for looking into it for me. @HD VN:1.0 SO:queryname @SQ SN:chr10 LN:130694993 @SQ SN:chr11 LN:122082543 @SQ SN:chr12 LN:120129022 @SQ SN:chr13 LN:120421639 @SQ SN:chr14 LN:124902244 @SQ SN:chr15...

I'll give it a try and let you know how it works. On Tue, Mar 5, 2019 at 1:26 PM Rongxin Fang wrote: > if you run snaptools pre on...

The demo works. Then it must be something specific about the bam file. Btw, the bam is generated by bowtie2 I think (from Olivier, but I added sample specific barcode),...

Yes, I removed the numbers and it worked. Are you planning to make it work with barcodes starting with numbers? Just curious. If not, I guess you can add a...

I see. I will modify my barcode accordingly. Thanks!