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Published 20 hours ago • verified publisher icon shawnzhangyx
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Metadata

a peak-calling and differential analysis tool for replicated ChIP-Seq data

Results 4 PePr issues
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ATAC-seq/DNase-seq Analysis

13 comment

Is there a way to run PePr without specifying input files, as is the case for analyzing ATAC-seq/DNase-seq data?

robertamezquita avatar robertamezquita

RuntimeWarning

1 comment

So I ran the differential binding routine, and everything finished without a fatal error. However the log file notes a bunch of run time wranings, specifically an issue with numpy...

aakashsur avatar aakashsur

Galaxy wrapper for PePr

5 comment

Hi, Are there any plans to develop a Galaxy (usegalaxy.org) wrapper for PePr? Thank you in advance. Best wishes, Mic

mictadlo avatar mictadlo

Remove chip1 / chip2 intersecting regions

3 comment

I've observed that chip1 peaks and chip2 peaks can overlap a little bit at the edges. We've discussed how that comes from the windowing approach, but would it be possible...

rcavalcante avatar rcavalcante

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verified publisher icon shawnzhangyx

Metadata

a peak-calling and differential analysis tool for replicated ChIP-Seq data

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