shotmap
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sharpton
A Shotgun Metagenome Annotation Pipeline
Hello. I've been trying to create a database using the resource mentioned in your paper, but so far I don't seem to be having any luck. I'm wondering: what should...
Install dies with: --2017-06-19 17:23:43-- ftp://selab.janelia.org/pub/software/hmmer3/3.1b1/hmmer-3.1b1-linux-intel-x86_64.tar.gz (try:20) => ‘hmmer-3.1b1-linux-intel-x86_64.tar.gz’ Connecting to selab.janelia.org (selab.janelia.org)|206.241.0.22|:21... failed: Connection timed out. Giving up. Seems like a rather complex and fragile installation process. Any particular...
Hi Sorry for the rather naive question. But could you point me to any tutorials on how to setup, for example a KEGG protein family database, to use with shotmap?...
HI, I am working to install shotmap for a user at the Researching Computing Center on a CentOS6.6 system and running into two issues in the automated installation via install.pl...
Hi, I ran the following command and encountered an error. perl /home/opt/shotmap/scripts/shotmap.pl -i shotmap_input/ -d shotmap -o shotmap_output/ --nprocs 20 --class-score=35 --postrare-samps=69423326 --rarefaction-type=read From what I can tell it successfully...
Hello I just installed Shotmap and I am just running some tests with a few metagenomic fasta files that I have and I can't seem to create the configuration file....
## Problem must use --reload to re-run samples that whose runs have failed for some reason. ## Proposed solution --reload should still 'rerun' a sample but you could check for...
