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SHARC produces differently formatted output.log, that can not be read by diagnostics.py

Open MartinPeschel opened this issue 1 year ago • 2 comments

Hi everyone!

When running my trajectories, and trying to get the diagnostics, diagnostics.py produces the error An error occured while trying to extract the status. Files may be corrupted. for every single trajectory. I looked into the code and the problem seems to be that diagnostics.py expects the entries in the file to be formatted like this: <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<============================>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< Entering timestep 1 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<============================>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> Start time: Thu Mar 9 13:28:16 2023 Which it was in the previous versions of SHARC. However, in my new trajectories using SHARC 3.0.1, the entries are formatted like this:

<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<============================>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< Entering timestep 0 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> <<<<<<<<<<<<<<<<<<<<<<<<<<<< Trajectory time in fs 0.00000 >>>>>>>>>>>>>>>>>>>>>>>>>>>> <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<============================>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> Start time: Thu Feb 15 16:04:06 2024

which causes the error.

Best wishes, Martin

MartinPeschel avatar Feb 16 '24 14:02 MartinPeschel