shannjiang

Hi @lindenb , I am using the lowresbam2raster and successfully generated the CNV graphs. I have a question on the depth panel. Here are the two graphs generated:  ...

Hi @chr1swallace, I am running susie and I need to determine the sample size N for it. What confused me is that the GWAS summary statistics provide Nsum for each...

length of snp vector should be 1 less than ncol(res$lbf_variable)

6

Hi, I bumped to this error when running susie on the attached test data: ### ** Examples library(coloc) data(coloc_test_data) result=runsusie(coloc_test_data$D1) running max iterations: 100 converged: TRUE Error in annotate_susie(res, snp):...

installation error (Failed to install 'Ularcirc' from GitHub)

1

Dear Sir or Madam, I am trying to use the Ularcirc to visualize the circRNAs I found. I just followed the installation pipeline but failed with the error info: package...

Dear Sir or Madam, I am trying to use the kallisto/bustools pipeline (https://www.kallistobus.tools/kite_tutorial.html) on our KITE-seq data. I have a question on the following command: kallisto index -i FeaturesMismatch.idx -k...

deletion called by lumpy without obvious drop in depth in graph

1

Hi, I used lumpy to call structural variants on my WGS data. There is one deletion detected by delly interested me and I did cnv graphs by lowresbam2raster (http://lindenb.github.io/jvarkit/LowResBam2Raster.html) to...