shannjiang

Hi @chr1swallace , Thanks for figuring that out. After I successfully run the command runsusie(), the command summary(result) didn't show anything informative: > result=runsusie(coloc_test_data$D1) running max iterations: 100 converged: TRUE...

@chr1swallace the aboved mentioned information is what I updated coloc: > library(coloc) **This is coloc version 5.2.3** > data(coloc_test_data) > result=runsusie(coloc_test_data$D1) running max iterations: 100 converged: TRUE **> summary(result) Mode...

Hi @chr1swallace, Thank you so much! It's working now. Best, Shan

Hi I got the same error but from different line: Traceback (most recent call last): File "/sc/arion/projects/H_PBG/scripts/NGSCheckMate/ncm.py", line 1470, in createDataSetFromList(base_list,bedFile) File "/sc/arion/projects/H_PBG/scripts/NGSCheckMate/ncm.py", line 403, in createDataSetFromList real_depth[file] = depth[file]...