AutoNER

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How does Fuzzy CRF work during decoding?

2

Hi, I'm just curious about the decoding process of Fuzzy CRF. The paper said "For inference, we apply the Viterbi algorithm to maximize the score." But the original Viterbi algorithm...

unikcc

bio_embedding.txt link not working

2

Hey Prof. Shang, The link to the `bio_embedding.txt` is broken. Do you have a new place to host that file? Or could you explain the format of the embedding file?...

victorconan

Thanks for the work. When I dig deep into the code, I found that in the result of the function 'read_noisy_corpus', all the start token is marked as 'O' but...

puppyapple

Is is hard for us to download bio_embedding.txt because its memory is nearly 10GB. We hope to construct one by ourselves, so what is the baisc format of bio_embedding.txt. Can...

liweizhuo001

FileNotFoundError: [Errno 2] No such file or directory: './models/BC5CDR/annotations.ck'

1

could anyone help me with this error?

lx3528

I got this error after running the AutoNER without DEV_SET and TEST_SET: ``` Traceback (most recent call last): File "preprocess_partial_ner/encode_folder.py", line 281, in testa_dataset = encode_dataset(args.input_testa, w_map, c_map, cl_map, tl_map)...

zhao19991111

when running the train script, it does not create a test.pk file, is there a solution to this?

hamadalaqeel

Questions about the unknown type high quality phrases.

1

Hi, the original paper says > In our AutoNER model, these “unknown” positions have undefined boundary and type losses, be- cause (1) they make the boundary labels unclear; and (2)...

failable

Added language model optional parameters to the training script. If LMs are given, it will add contextualized representation as part of the input feature. It also needs to have model_word_ada...

xtang27

Could not get the bio_embedding.txt file

3

Hello, the link to bio_embedding.txt does not open, where can I get this file?

www-Ye