[chore] update torch version to 2.9

[FlamingoPg]

Motivation

As titled, update torch version to 2.9

Modifications

Accuracy Tests

Benchmarking and Profiling

Checklist

• [x] Format your code according to the Format code with pre-commit.
• [ ] Add unit tests according to the Run and add unit tests.
• [ ] Update documentation according to Write documentations.
• [ ] Provide accuracy and speed benchmark results according to Test the accuracy and Benchmark the speed.

[gemini-code-assist[bot]]

Summary of Changes

Hello @FlamingoPg, I'm Gemini Code Assist[^1]! I'm currently reviewing this pull request and will post my feedback shortly. In the meantime, here's a summary to help you and other reviewers quickly get up to speed!

This pull request focuses on a routine dependency upgrade, specifically updating the PyTorch framework to version 2.9.0 across the project. This involves modifying the primary Python dependency configuration and adjusting the kernel build script to reflect the new PyTorch version for various CUDA environments, streamlining the development and deployment process with the latest stable release.

Highlights

• PyTorch Version Update: The torch and torchaudio dependencies in python/pyproject.toml have been updated from version 2.8.0 to 2.9.0.
• Build Script Alignment: The sgl-kernel/build.sh script has been modified to install torch==2.9.0 for CUDA versions 13.0, 12.8, and the default case (likely 12.6), ensuring consistency with the updated PyTorch version.
• CUDA 12.9 Removal: The specific installation path for CUDA_VERSION = "12.9" has been removed from the sgl-kernel/build.sh script.

Ignored Files

• Ignored by pattern: .github/workflows/** (1)
  • .github/workflows/pr-test-pd-router.yml

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[Fridge003]

@FlamingoPg Seems triton is failing with this error https://github.com/sgl-project/sglang/actions/runs/19317390340/job/55254572458?pr=12969

We have met similar situations before. It's caused by https://github.com/triton-lang/triton/pull/8536/files, and we solved it by pinning the version of Triton to the commit before this culprit.

[FlamingoPg]

@FlamingoPg Seems triton is failing with this error https://github.com/sgl-project/sglang/actions/runs/19317390340/job/55254572458?pr=12969

We have met similar situations before. It's caused by https://github.com/triton-lang/triton/pull/8536/files, and we solved it by pinning the version of Triton to the commit before this culprit.

I see, looks we need to update triton_kernels in CMakeLists.txt https://github.com/triton-lang/triton/blob/3543fe1d52dd84fd4e5b792f916cafe2824e46ea/python/triton_kernels/triton_kernels/numerics_details/flexpoint.py#L54

[Fridge003]

Updates related to Torch 2.9

• Upgrade dependencies in pyproject.toml/Dockerfiles. Torch -> 2.9.1, triton -> 3.5.1
• Skip flaky multimodal test cases: Qwen/Qwen-Image-Edit, Wan-AI/Wan2.2-I2V-A14B-Diffusers
• Forcefully reinstall nvidia-cudnn-cu12==9.16.0.29, to avoid slow Conv3D kernel
• Skip mooncake all2all test. Mooncake will support torch 2.9 shortly
• Fix some flaky Lora tests

[Fridge003]

https://github.com/sgl-project/sglang/pull/12969/checks?check_run_id=56374158981 A few flaky CIs left. Can be fixed in following PRs.