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Published 20 hours ago • verified publisher icon sgkit-dev

CSV file descriptions for test_regenie results

Open gagank1 opened this issue 3 years ago • 1 comments

The CSV files in sgkit/tests/test_regenie/result could benefit from file descriptions as some of the column names are not clear. @EpiSlim

gagank1 avatar Jul 07 '21 17:07 gagank1

Hey @gagank1, the gwas.csv fields have these interpretations:

  • names: The variant ID
  • label: A simulated phenotype
  • beta/standardError/pValues: Results from running glow linear regression after running glow's regenie transformation

Does that clear up any confusion?

eric-czech avatar Jul 07 '21 19:07 eric-czech