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PLINK data missing for test_regenie datasets
The README in validation says the datasets used in test_regenie were generated via Hail and stored as PLINK files. We need these original PLINK files to run Glow and validate Regenie results for LOCO association testing. @EpiSlim
Hey @gagank1, that data can be generated by following the instructions at https://github.com/pystatgen/sgkit/tree/main/validation/gwas/docker and then https://github.com/pystatgen/sgkit/tree/main/validation/gwas/method/regenie.
It generates these PLINK files: regenie_simulations.zip
Closing as this has been addressed