Srinivas Gorur-Shandilya

Use global variables to split up integration loops into different functions

8

- [ ] define xolotl_network, pointers to outputs outside `mexFunction` - [ ] write integrations in subfunctions in mexTemplate - [ ] check that this is just as fast as...

xolotl should support standalone integration

2

See [HDF5 API for C++](https://support.hdfgroup.org/HDF5/doc/cpplus_RM/index.html) - [ ] g++ should compile a standalone binary - [ ] should write a wrapper function that is multithreaded, to run N-1 threads -...

add section explaining how random numbers are generated

1

need to have figures - [ ] compare MATLAB's `randn`, `gaussrand`, and C++'s built in generator - [ ] compare speed - [ ] show autocorrelation functions - [ ]...

add gifs showing features of xolotl in readme

1

- [ ] gif showing optimization using xfit - [ ] gif showing xgrid functionality - [x] gif showing manipulate - [ ] gif showing click-through ability - [ ]...

xolotl methods and properties should be hyperlinked everywhere in the docs

2

where we see a xolotl method name, that should be a link that when clicked to take you to the docs for that method

support for converting NEURON .mod files into xolotl-compatible C++ files

3

for now, only support channels

integer overflow prevents running long simulations

6

the maximum value of `int` is 2147483647 [source](https://msdn.microsoft.com/en-us/library/7fh3a000.aspx) This means that if `t_end` is very large, `nsteps` can exceed this bound. which causes `nsteps` to be negative, which means the...

the new spikes_only options is unsafe

3

it's possible to reference a element in the array that is out of bounds, causing a hard MATLAB crash