flexbar
flexbar copied to clipboard
-ap ONLY mode does not use -at RIGHT vs -at LEFT
I think -ap ONLY mode should still respect the -at option (to keep RIGHT or LEFT side)
flexbar -n 16 -r 1.fastq.gz -p 2.fastq.gz -av 20 -at RIGHT -ap ONLY -t trimmed_ends_right -l ALL
and
flexbar -n 16 -r 1.fastq.gz -p 2.fastq.gz -av 20 -at LEFT -ap ONLY -t trimmed_ends_left -l ALL
produce identical output.
This can be handy for evaluating the trimmed sequences.