Selman Özleyen

nan values and division by zero warnings on stochastic solvers

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## Description The following output showed up when playing with the codes on the docs of the stochastic sub-module. I think the output of the following code snippet is clear...

Hi, I am using SteelSeries Rival 3 Wireless and with linux the battery is draining really quick with default settings. I figured it is kind of important to have the...

Draft for AnnData html repr

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This is an implementation for HTML representation of **anndata** objects. I mostly copied from **xarray**: https://github.com/pydata/xarray and the other draft pr #694. It addresses the issue #675. In #694 @ivirshup...

Dask array support

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A PR to get started on #693. _Going to update this as we move forward. Also, please correct me if I got something wrong._ We should start looking on having...

Distributed writing for H5ad format due to h5py objects being unserializable

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### Please make sure these conditions are met - [X] I have checked that this issue has not already been reported. - [X] I have confirmed this bug exists on...

Fix: Large number of dataframe columns (H5py Attr Limit)

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Hi @ivirshup @brainfo, This PR solves https://github.com/scverse/anndata/issues/874. I had a chat with h5py people and this was the simplest workaround they recommended. They also have no idea why it works....

Add Sparse Geodesic Cost Support

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Here are the steps I planned. I first want to ensure the tests work with this version and I am currently on that step. - [x] make sure it works...

Fix TranslationProblem and xy being set when alpha is 1 then improve tests

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I did thes things in this PR: - Fix and test https://github.com/theislab/moscot/issues/687 - Add another error case for https://github.com/theislab/moscot/issues/680 i.e. throw error when xy is given and alpha is 1...

`TranslationProblem.prepare` method can't set `joint_attr={"attr":"X"}`

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When I try to run this ```python tp = tp.prepare(batch_key="batch", src_attr=src_attr, tgt_attr=tgt_attr, joint_attr={"attr": "X"}) ``` TemporalProblem will give an error because of this line https://github.com/theislab/moscot/blob/3151da7b324672fab6757b8a84bcd1d0bcb9f027/src/moscot/problems/cross_modality/_translation.py#L167 with the message `KeyError: 'x_key'`

Unbalanced FGW doesn't converge when margins are provided

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**Describe the bug** For application use case see tests from moscot https://github.com/theislab/moscot/actions/runs/8709537760/job/23889450330?pr=677 Unbalanced FGW is unstable especially when margins are provided. I played with epsilon and tau's but still doesn't...