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Issues when mapping Galaxy toolshed to bio.tools
Spaces in tool name:
{
"value": "GA4GH Beacon",
"reftype": "bio.tools"
}
...the actual bio.tools ID is GA4GH_Beacon
Comma-separated tools:
{
"value": "graphclust, GraphClust2",
"reftype": "bio.tools"
}
...graphclust
and GraphClust2
are both valid bio.tools ID, so we need to link the Galaxy tool to multiple bio.tools entries
hey @fbacall the first one is a metadata issue - if you haven't already, I can generate a PR against that tool wrapper with the fix?
hey @fbacall the first one is a metadata issue - if you haven't already, I can generate a PR against that tool wrapper with the fix?
Sounds good!
The second one is also definitely an issue, we've started linting that they're valid identifiers, that's not valid as far as galaxy is concerned. The wrapper should be fixed there too
https://github.com/galaxyproject/tools-iuc/pull/5951