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Issues when mapping Galaxy toolshed to bio.tools

Open fbacall opened this issue 4 months ago • 4 comments

Spaces in tool name:

          {
            "value": "GA4GH Beacon",
            "reftype": "bio.tools"
          }

...the actual bio.tools ID is GA4GH_Beacon

Comma-separated tools:

          {
            "value": "graphclust, GraphClust2",
            "reftype": "bio.tools"
          }

...graphclust and GraphClust2 are both valid bio.tools ID, so we need to link the Galaxy tool to multiple bio.tools entries

fbacall avatar Apr 10 '24 12:04 fbacall

hey @fbacall the first one is a metadata issue - if you haven't already, I can generate a PR against that tool wrapper with the fix?

supernord avatar Apr 10 '24 21:04 supernord

hey @fbacall the first one is a metadata issue - if you haven't already, I can generate a PR against that tool wrapper with the fix?

Sounds good!

fbacall avatar Apr 11 '24 08:04 fbacall

The second one is also definitely an issue, we've started linting that they're valid identifiers, that's not valid as far as galaxy is concerned. The wrapper should be fixed there too

hexylena avatar Apr 12 '24 09:04 hexylena

https://github.com/galaxyproject/tools-iuc/pull/5951

supernord avatar Apr 16 '24 07:04 supernord