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Ray Meta: What is the difference between scaffolds and contigs?
Looking at the OutputNumbers.txt
file, it looks like I get the same numbers for scaffolds and contigs:
Contigs >= 100 nt
Number: 455357
Total length: 76317200
Average: 167
N50: 155
Median: 146
Largest: 21813
Contigs >= 500 nt
Number: 4483
Total length: 3882106
Average: 865
N50: 855
Median: 680
Largest: 21813
Scaffolds >= 100 nt
Number: 455357
Total length: 76317200
Average: 167
N50: 155
Median: 146
Largest: 21813
Scaffolds >= 500 nt
Number: 4483
Total length: 3882106
Average: 865
N50: 855
Median: 680
Largest: 21813
Thanks for any advice!