Independent Kmer total in Taxons.xml

[fredericraymond]

In addition to kmerOccurences, add kmerUnits or something like that in Taxons.xml.

[fredericraymond]

Also add the mean kmer depth of kmers or mode kmer depth.

[fredericraymond]

If it is possible, the total number of possible kmer within a taxon would be useful.

[sebhtml]

The current entry format:

Streptococcusgenus1418 Bacteriakingdom4018 Firmicutesphylum4045 Bacilliclass4659 Lactobacillalesorder55 Streptococcaceaefamily4364 Streptococcusgenus1418 501105710.8316420.831642 61125672 1.014451.014451 - for self, add these:

** numberOfKmers ** modeKmerObservations ** meanKmerObservations ** maximumNumberOfKmers

• for recursive:

** numberOfKmers ** modeKmerObservations ** meanKmerObservations

[sebhtml]

I need to read the code to check what is sent and synchronize -- it may be necessary to change the code to synchronize distributions instead of raw counts. If it is the case, this will move out of the v2.2.0 milestone and into the next.

[sebhtml]

TaxonomyViewer/TaxonomyViewer.cpp

line 834

            m_taxonObservations[taxon]+=kmerCoverage; // case 2.

this will be replaced by

            m_taxonObservations[taxon][kmerCoverage] ++; // case 2.

Moving this to Ray-Future.

[sebhtml]

Evaluation: 30 human-hours