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Published 20 hours ago • verified publisher icon sebhtml

compute local coverages during extension to further increase locality

Open sebhtml opened this issue 12 years ago • 7 comments

sebhtml avatar Jan 09 '13 04:01 sebhtml

Let's say we have a peak coverage of 800 (unique region). Then, during the traversal, it goes down to 300 (unique region), and suddenly, spikes at 600 (repeated region). This will likely cause a misassembly because 600 < 2*800 anyway.

The solution to that is to use an average of the last 512 vertices to compute the value.

sebhtml avatar Jan 09 '13 04:01 sebhtml

This ticket may fixes #153 -- it's probably worth a try.

sebhtml avatar Apr 03 '13 18:04 sebhtml

Evaluation: 15 human-hours

sebhtml avatar Apr 17 '13 15:04 sebhtml

/mnt/lustre03/corbeil/corbeil_group/projects/ray-assembler/tickets/132/contig-13000021

sebhtml avatar Jun 11 '13 20:06 sebhtml

distributions

Computing the coverage on seeds is probably good enough.

sebhtml avatar Jun 12 '13 18:06 sebhtml

Generating data in /home/boisver1/corbeil_group-lustre03/projects/ray-assembler/tickets/132/ray-ticket-132-2013-06-11-1 for inspection in Ray Cloud Browser.

sebhtml avatar Jun 12 '13 18:06 sebhtml

data is in data, will deploy endpoint tomorrow.

sebhtml avatar Jun 12 '13 19:06 sebhtml