Sebastien Boisvert

icon indicating a website link http://x.com/sebhtml icon indicating an email [email protected]

icon company Contxtful Technologies icon location Quebec City icon location I like software development, AI, biology and using good tools like git, cargo, and docker.

Results 24 issues of Sebastien Boisvert

free memory in destructor of SeedWorker

and also, cast Worker\* to SeedWorker in module SeedingData.

add scaffolder metrics

That's a good point. A good metric that Ray could produce to start with would be the number of pairs (including mates) with: 1. both ends within a contig; 2....

add ReadLengthDistribution.txt

compute local coverages during extension to further increase locality

7 comment

There are contigs that are disconnected from the graph -- these are errors

http://genome.ulaval.ca:10241/client/?map=0&section=1&region=617&location=66&depth=0&zoom=0.6668164763916035

add a second Bloom filter to remove sequencing errors with frequency = 2.

Filter automatically obvious false positives in "Ray Communities" using topology

2 comment

Stakeholder: F. Raymond

Implement a multiplicity engine

2 comment

Is there an option for Ray to output reads not used in the assembly? Is this in the AMOS file?

4 comment

Is there an option for Ray to output reads not used in the assembly? Is this in the AMOS file? Reported-by: Keith Robison

rewrite the checkpointing code to dump 1 file per process instead of many files, use large offsets

2 comment