Sebastien Boisvert

TaxonomyViewer/TaxonomyViewer.cpp line 834 ``` m_taxonObservations[taxon]+=kmerCoverage; // case 2. ``` this will be replaced by ``` m_taxonObservations[taxon][kmerCoverage] ++; // case 2. ``` Moving this to Ray-Future.

Evaluation: 30 human-hours

format: ` magicNumber (64 bits) format (32 bits) kmerLength (32 bits) numberOfMPIRanks (32 bits) sections (32 bits) ` sectionKey will be handles for checkpoints, in the source code, these will...

will need a Ray option to manage checkpoints like: Ray manage-checkpoints list checkpointDirectory -----> list checkpoints Ray manage-checkpoints remove checkpointDirectory checkpointName -----> remove a checkpoint

I am not working actively on Ray anymore. If you submit a patch, I can review it and merge it. Our new assembler project is called "spate". One of the...

needs #143

I tested (see 62079e5550dc0185c3655936c31567a0a06c334c ) with the sample sheet line you provided it works. $ ./issue-4.sh IndexSize= 1089 Index1Length= 8 Index2Length= 8 The index should contain 1089 elements for that...

In my test, files are like that: $ find Sample_lane1-test/|grep .fastq.gz Sample_lane1-test/lane1_NoIndex_L001_R1_001.fastq.gz Sample_lane1-test/lane1_NoIndex_L001_R2_001.fastq.gz Sample_lane1-test/lane1_NoIndex_L001_R3_001.fastq.gz Sample_lane1-test/lane1_NoIndex_L001_R4_001.fastq.gz I use the command ../FastDemultiplexer.py SampleSheet-NOVA.csv 1 Sample_lane1-test Output