Jing Wang

I have 2 replicates, but only have the bwt2merged.bam files for replicate #1. You can find the bwt2merged.bam files here, https://vanderbilt.box.com/s/ma4tjc6m8z81tr4pgvuvg53kmbjbavso Thank you! On Thursday, February 3, 2022, Nicolas Servant...

Hi I also have the same problem. But the combine.log only has two lines: $ more result/logs/rep1/mapping_combine.log /usr/local/anaconda/bin/samtools merge -@ 2 -n -f bowtie_results/bwt2/rep1/SRR401 5027_pass_2_hg19.bwt2merged.bam bowtie_results/bwt2_global/rep1/SRR4015027_pass_2 _hg19.bwt2glob.bam bowtie_results/bwt2_local/rep1/SRR4015027_pass_2_hg19.bwt2glob .unmap_bwt2loc.bam /usr/local/anaconda/bin/samtools...

and here is the main log... Thu Jan 27 20:11:41 CST 2022 Combine R1/R2 alignment files ... Logs: logs/rep1/mapping_combine.log make: *** [/usr/local/bin/HiC-Pro_2.11.4/bin/../scripts//Makefile:115: bowtie_com bine] Error 129 Hangup