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Published 20 hours ago • verified publisher icon scrtlabs

Catalyst Will Not Install on MacOS Mojave

Open DLWCMD opened this issue 5 years ago • 1 comments

Dear Catalyst Maintainers,

Before I tell you about my issue, let me describe my environment:

Environment

  • Operating System: MacOS Mojave (10.14.6)

  • Python Version: 3.6

  • Python Bitness: 64

  • How did you install Catalyst: Conda with pip, per web site instructions

  • Python packages: The following NEW packages will be INSTALLED:

    blas pkgs/main/osx-64::blas-1.0-mkl ca-certificates pkgs/main/osx-64::ca-certificates-2019.10.16-0 certifi pkgs/main/osx-64::certifi-2019.9.11-py36_0 intel-openmp pkgs/main/osx-64::intel-openmp-2019.4-233 libcxx pkgs/main/osx-64::libcxx-4.0.1-hcfea43d_1 libcxxabi pkgs/main/osx-64::libcxxabi-4.0.1-hcfea43d_1 libedit pkgs/main/osx-64::libedit-3.1.20181209-hb402a30_0 libffi pkgs/main/osx-64::libffi-3.2.1-h475c297_4 libgfortran pkgs/main/osx-64::libgfortran-3.0.1-h93005f0_2 mkl pkgs/main/osx-64::mkl-2019.4-233 mkl-service pkgs/main/osx-64::mkl-service-2.3.0-py36hfbe908c_0 mkl_fft pkgs/main/osx-64::mkl_fft-1.0.15-py36h5e564d8_0 mkl_random pkgs/main/osx-64::mkl_random-1.1.0-py36ha771720_0 ncurses pkgs/main/osx-64::ncurses-6.1-h0a44026_1 numpy pkgs/main/osx-64::numpy-1.17.3-py36h4174a10_0 numpy-base pkgs/main/osx-64::numpy-base-1.17.3-py36h6575580_0 openssl pkgs/main/osx-64::openssl-1.1.1d-h1de35cc_3 pip pkgs/main/osx-64::pip-19.3.1-py36_0 python pkgs/main/osx-64::python-3.6.9-h359304d_0 readline pkgs/main/osx-64::readline-7.0-h1de35cc_5 scipy pkgs/main/osx-64::scipy-1.3.1-py36h1410ff5_0 setuptools pkgs/main/osx-64::setuptools-41.6.0-py36_0 six pkgs/main/osx-64::six-1.13.0-py36_0 sqlite pkgs/main/osx-64::sqlite-3.30.1-ha441bb4_0 tk pkgs/main/osx-64::tk-8.6.8-ha441bb4_0 wheel pkgs/main/osx-64::wheel-0.33.6-py36_0 xz pkgs/main/osx-64::xz-5.2.4-h1de35cc_4 zlib pkgs/main/osx-64::zlib-1.2.11-h1de35cc_3

Now that you know a little about me, let me tell you about the issue I am having:

  • What did you expect to happen? After failing to install Catalyst on Python 3.6 with the yml file, I attempted to use the alternate steps recommended after failure.

  • What happened instead? A train wreck. :) Mutiple issues as shown below and, in particular failure to build bcolze wheel and install GCC Building wheel for bcolz (setup.py) ... error ERROR: Command errored out with exit status 1:

     _error: command 'gcc' failed with exit status 1_

(catalyst) Davids-MacBook-Pro:~ david$ pip install enigma-catalyst matplotlib --ignore-installed Processing ./Library/Caches/pip/wheels/7d/d6/73/5666f4b95c9cf4b926a00b6ab66229f0f2334d5b8fe38b0352/enigma_catalyst-0.5.21-cp36-cp36m-macosx_10_7_x86_64.whl Collecting matplotlib Using cached https://files.pythonhosted.org/packages/cf/a4/d5387a74204542a60ad1baa84cd2d3353c330e59be8cf2d47c0b11d3cde8/matplotlib-3.1.1-cp36-cp36m-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl Collecting redo==2.0.1 Using cached https://files.pythonhosted.org/packages/96/89/e5a744ac4d0e360ece6886344550f0a9c588d789197821cc2450c99c6d5b/redo-2.0.1-py2.py3-none-any.whl Collecting statsmodels==0.8.0 Using cached https://files.pythonhosted.org/packages/8c/c9/83aa867c2ef076e9bbaa0ffc3339d73cd47221c6d2a2d2498cb32c8a2458/statsmodels-0.8.0-cp36-cp36m-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl Collecting numpy==1.14.0 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Collecting eth-utils<2.0.0,>=1.0.1 Using cached https://files.pythonhosted.org/packages/9b/33/872822774ae187b1891dd112ba15615de6da52bd7e20c9923871cddc002c/eth_utils-1.8.0-py3-none-any.whl Collecting docutils>=0.10 Using cached https://files.pythonhosted.org/packages/22/cd/a6aa959dca619918ccb55023b4cb151949c64d4d5d55b3f4ffd7eee0c6e8/docutils-0.15.2-py3-none-any.whl Processing ./Library/Caches/pip/wheels/d3/00/b3/32d613e19e08a739751dd6bf998cfed277728f8b2127ad4eb7/idna_ssl-1.1.0-cp36-none-any.whl Collecting attrs>=17.3.0 Using cached https://files.pythonhosted.org/packages/a2/db/4313ab3be961f7a763066401fb77f7748373b6094076ae2bda2806988af6/attrs-19.3.0-py2.py3-none-any.whl Collecting async-timeout<4.0,>=3.0 Using cached https://files.pythonhosted.org/packages/e1/1e/5a4441be21b0726c4464f3f23c8b19628372f606755a9d2e46c187e65ec4/async_timeout-3.0.1-py3-none-any.whl Collecting multidict<5.0,>=4.5 Using cached https://files.pythonhosted.org/packages/7f/cb/0404f4c326cdc7352bdfad8c38662b19c423cb6e3e39a171f30f6c6ac92e/multidict-4.5.2-cp36-cp36m-macosx_10_12_intel.macosx_10_12_x86_64.macosx_10_13_intel.macosx_10_13_x86_64.whl Collecting typing-extensions>=3.6.5; python_version < "3.7" Using cached https://files.pythonhosted.org/packages/03/92/705fe8aca27678e01bbdd7738173b8e7df0088a2202c80352f664630d638/typing_extensions-3.7.4.1-py3-none-any.whl Processing ./Library/Caches/pip/wheels/ed/38/77/dbc738643898bcd7545369207a86dcc752b9be6312c738ebcb/pycares-3.0.0-cp36-cp36m-macosx_10_7_x86_64.whl Collecting pycryptodome<4,>=3.6.6; extra == "pycryptodome" Using cached https://files.pythonhosted.org/packages/b4/b1/1c9fff23d516d080981f24f7b282fa390c97bea9bdc665f1fb8fd263d0c3/pycryptodome-3.9.3-cp36-cp36m-macosx_10_6_intel.whl Collecting attrdict<3,>=2.0.0 Using cached https://files.pythonhosted.org/packages/ef/97/28fe7e68bc7adfce67d4339756e85e9fcf3c6fd7f0c0781695352b70472c/attrdict-2.0.1-py2.py3-none-any.whl Collecting eth-keyfile<0.6.0,>=0.5.0 Using cached https://files.pythonhosted.org/packages/eb/a5/3615d100b62fbf20fe5d5c0d1d4d7326eac861d260b0cd2a36af2bf8ccb1/eth_keyfile-0.5.1-py3-none-any.whl Collecting eth-keys<0.3.0,>=0.2.0b3 Using cached https://files.pythonhosted.org/packages/61/4f/d8e778e377e0b9287b5ffc7ecc4e3b1e9d3045030d391acc7328e23708f2/eth_keys-0.2.4-py3-none-any.whl Collecting eth-rlp<1,>=0.1.2 Using cached https://files.pythonhosted.org/packages/56/4b/b309fb44dd9bb975e84f3d626392eec1eeed0108e55a51cd7dd8956a73ad/eth_rlp-0.1.2-py3-none-any.whl Collecting eth-typing<3.0.0,>=2.0.0 Using cached https://files.pythonhosted.org/packages/6d/6a/c117936e8ac47ed864d44bb422ad34c958cd80759c9f14255e79ab6fb458/eth_typing-2.2.0-py3-none-any.whl Processing ./Library/Caches/pip/wheels/b7/8d/e7/a0e74217da5caeb3c1c7689639b6d28ddbf9985b840bc96a9a/parsimonious-0.8.1-cp36-none-any.whl Collecting cffi>=1.5.0 Using cached https://files.pythonhosted.org/packages/c1/ae/bcf26260176ca7ea576f4c7ddf8dc2a5397d8792699dc9dce2790851958e/cffi-1.13.2-cp36-cp36m-macosx_10_6_intel.whl Collecting rlp<2,>=0.6.0 Using cached https://files.pythonhosted.org/packages/54/d4/3013691b8c4702cb1c3253be643f2cef12e9bee93e134694e6dab83f41e2/rlp-1.1.0-py2.py3-none-any.whl Processing ./Library/Caches/pip/wheels/f2/9a/90/de94f8556265ddc9d9c8b271b0f63e57b26fb1d67a45564511/pycparser-2.19-py2.py3-none-any.whl Building wheels for collected packages: bcolz Building wheel for bcolz (setup.py) ... error ERROR: Command errored out with exit status 1: command: /Users/david/anaconda3/envs/catalyst/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/d4/_6xpn13j2t762s_81w8854f00000gp/T/pip-install-9p45ypdq/bcolz/setup.py'"'"'; file='"'"'/private/var/folders/d4/_6xpn13j2t762s_81w8854f00000gp/T/pip-install-9p45ypdq/bcolz/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/d4/_6xpn13j2t762s_81w8854f00000gp/T/pip-wheel-fs__ibnq --python-tag cp36 cwd: /private/var/folders/d4/_6xpn13j2t762s_81w8854f00000gp/T/pip-install-9p45ypdq/bcolz/ Complete output (116 lines): SSE2 detected AVX2 detected running bdist_wheel running build running build_py creating build creating build/lib.macosx-10.7-x86_64-3.6 creating build/lib.macosx-10.7-x86_64-3.6/bcolz copying bcolz/py2help_tests.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz copying bcolz/version.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz copying bcolz/toplevel.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz copying bcolz/ctable.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz copying bcolz/init.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz copying bcolz/utils.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz copying bcolz/chunked_eval.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz copying bcolz/defaults.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz copying bcolz/attrs.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz copying bcolz/py2help.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz copying bcolz/arrayprint.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz creating build/lib.macosx-10.7-x86_64-3.6/bcolz/tests copying bcolz/tests/test_ndcarray.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests copying bcolz/tests/test_carray_objects.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests copying bcolz/tests/test_attrs.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests copying bcolz/tests/init.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests copying bcolz/tests/all.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests copying bcolz/tests/common.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests copying bcolz/tests/test_queries.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests copying bcolz/tests/test_ctable.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests copying bcolz/tests/test_carray.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests copying bcolz/carray_ext.pxd -> build/lib.macosx-10.7-x86_64-3.6/bcolz running build_ext skipping 'bcolz/carray_ext.c' Cython extension (up-to-date) building 'bcolz.carray_ext' extension creating build/temp.macosx-10.7-x86_64-3.6 creating build/temp.macosx-10.7-x86_64-3.6/bcolz creating build/temp.macosx-10.7-x86_64-3.6/c-blosc creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/lz4-1.8.1.2 creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/snappy-1.1.1 creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zlib-1.2.8 creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4 creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/compress creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/dictBuilder creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/decompress creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/legacy creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/common creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/deprecated gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c bcolz/carray_ext.c -o build/temp.macosx-10.7-x86_64-3.6/bcolz/carray_ext.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 In file included from bcolz/carray_ext.c:525: In file included from /Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822: /Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with "
^ 1 warning generated. gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c c-blosc/blosc/blosc.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/blosc.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 c-blosc/blosc/blosc.c:874:7: warning: unused variable 'rc' [-Wunused-variable] int rc; ^ c-blosc/blosc/blosc.c:1656:7: warning: unused variable 'rc' [-Wunused-variable] int rc; ^ c-blosc/blosc/blosc.c:2136:7: warning: unused variable 'rc' [-Wunused-variable] int rc; ^ 3 warnings generated. gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c c-blosc/blosc/bitshuffle-generic.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/bitshuffle-generic.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c c-blosc/blosc/shuffle.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/shuffle.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 In file included from c-blosc/blosc/shuffle.c:11: c-blosc/blosc/shuffle-generic.h:32:13: warning: unused function 'shuffle_generic_inline' [-Wunused-function] static void shuffle_generic_inline(const size_t type_size, ^ c-blosc/blosc/shuffle-generic.h:61:13: warning: unused function 'unshuffle_generic_inline' [-Wunused-function] static void unshuffle_generic_inline(const size_t type_size, ^ 2 warnings generated. gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c c-blosc/blosc/fastcopy.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/fastcopy.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 c-blosc/blosc/fastcopy.c:137:30: warning: unused function 'copy_32_bytes_aligned' [-Wunused-function] static inline unsigned char *copy_32_bytes_aligned(unsigned char *out, const unsigned char *from) { ^ c-blosc/blosc/fastcopy.c:270:30: warning: unused function 'chunk_memcpy_32' [-Wunused-function] static inline unsigned char *chunk_memcpy_32(unsigned char *out, const unsigned char *from, unsigned len) { ^ c-blosc/blosc/fastcopy.c:294:30: warning: unused function 'chunk_memcpy_32_unrolled' [-Wunused-function] static inline unsigned char *chunk_memcpy_32_unrolled(unsigned char *out, const unsigned char *from, unsigned len) { ^ c-blosc/blosc/fastcopy.c:402:30: warning: unused function 'chunk_memcpy_aligned' [-Wunused-function] static inline unsigned char *chunk_memcpy_aligned(unsigned char *out, const unsigned char *from, unsigned len) { ^ 4 warnings generated. gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c c-blosc/blosc/blosclz.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/blosclz.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 c-blosc/blosc/blosclz.c:148:35: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare] if (_mm256_movemask_epi8(cmp) != 0xFFFFFFFF) { ~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~ c-blosc/blosc/blosclz.c:219:35: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare] if (_mm256_movemask_epi8(cmp) != 0xFFFFFFFF) { ~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~ c-blosc/blosc/blosclz.c:82:24: warning: unused function 'get_run' [-Wunused-function] static inline uint8_t *get_run(uint8_t *ip, const uint8_t *ip_bound, const uint8_t *ref) { ^ c-blosc/blosc/blosclz.c:110:24: warning: unused function 'get_run_16' [-Wunused-function] static inline uint8_t *get_run_16(uint8_t *ip, const uint8_t *ip_bound, const uint8_t *ref) { ^ 4 warnings generated. gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c c-blosc/blosc/shuffle-generic.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/shuffle-generic.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c c-blosc/internal-complibs/lz4-1.8.1.2/lz4hc.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/lz4-1.8.1.2/lz4hc.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c c-blosc/internal-complibs/lz4-1.8.1.2/lz4.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/lz4-1.8.1.2/lz4.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c c-blosc/internal-complibs/snappy-1.1.1/snappy-stubs-internal.cc -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/snappy-1.1.1/snappy-stubs-internal.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 warning: include path for stdlibc++ headers not found; pass '-stdlib=libc++' on the command line to use the libc++ standard library instead [-Wstdlibcxx-not-found] c-blosc/internal-complibs/snappy-1.1.1/snappy-stubs-internal.cc:29:10: fatal error: 'algorithm' file not found #include ^~~~~~~~~~~ 1 warning and 1 error generated. error: command 'gcc' failed with exit status 1

ERROR: Failed building wheel for bcolz Running setup.py clean for bcolz Failed to build bcolz Installing collected packages: redo, numpy, six, patsy, scipy, python-dateutil, pytz, pandas, statsmodels, pip, click, sqlalchemy, MarkupSafe, Mako, python-editor, alembic, jmespath, docutils, botocore, s3transfer, boto3, numexpr, tables, idna, urllib3, chardet, certifi, requests, setuptools, requests-toolbelt, toolz, multidict, yarl, idna-ssl, attrs, async-timeout, typing-extensions, aiohttp, lru-dict, pycryptodome, eth-hash, cytoolz, eth-typing, eth-utils, attrdict, eth-keys, eth-keyfile, rlp, hexbytes, eth-rlp, eth-account, websockets, parsimonious, eth-abi, web3, pycparser, cffi, pycares, aiodns, cchardet, ccxt, bcolz, requests-file, wrapt, requests-ftp, lxml, pandas-datareader, Cython, sortedcontainers, intervaltree, bottleneck, decorator, empyrical, cyordereddict, Logbook, contextlib2, networkx, multipledispatch, enigma-catalyst, pyparsing, cycler, kiwisolver, matplotlib Running setup.py install for bcolz ... error ERROR: Command errored out with exit status 1: command: /Users/david/anaconda3/envs/catalyst/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/d4/_6xpn13j2t762s_81w8854f00000gp/T/pip-install-9p45ypdq/bcolz/setup.py'"'"'; file='"'"'/private/var/folders/d4/_6xpn13j2t762s_81w8854f00000gp/T/pip-install-9p45ypdq/bcolz/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /private/var/folders/d4/_6xpn13j2t762s_81w8854f00000gp/T/pip-record-flf9o_wl/install-record.txt --single-version-externally-managed --compile cwd: /private/var/folders/d4/_6xpn13j2t762s_81w8854f00000gp/T/pip-install-9p45ypdq/bcolz/ Complete output (116 lines): SSE2 detected AVX2 detected running install running build running build_py creating build creating build/lib.macosx-10.7-x86_64-3.6 creating build/lib.macosx-10.7-x86_64-3.6/bcolz copying bcolz/py2help_tests.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz copying bcolz/version.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz copying bcolz/toplevel.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz copying bcolz/ctable.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz copying bcolz/init.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz copying bcolz/utils.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz copying bcolz/chunked_eval.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz copying bcolz/defaults.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz copying bcolz/attrs.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz copying bcolz/py2help.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz copying bcolz/arrayprint.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz creating build/lib.macosx-10.7-x86_64-3.6/bcolz/tests copying bcolz/tests/test_ndcarray.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests copying bcolz/tests/test_carray_objects.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests copying bcolz/tests/test_attrs.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests copying bcolz/tests/init.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests copying bcolz/tests/all.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests copying bcolz/tests/common.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests copying bcolz/tests/test_queries.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests copying bcolz/tests/test_ctable.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests copying bcolz/tests/test_carray.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests copying bcolz/carray_ext.pxd -> build/lib.macosx-10.7-x86_64-3.6/bcolz running build_ext skipping 'bcolz/carray_ext.c' Cython extension (up-to-date) building 'bcolz.carray_ext' extension creating build/temp.macosx-10.7-x86_64-3.6 creating build/temp.macosx-10.7-x86_64-3.6/bcolz creating build/temp.macosx-10.7-x86_64-3.6/c-blosc creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/lz4-1.8.1.2 creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/snappy-1.1.1 creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zlib-1.2.8 creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4 creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/compress creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/dictBuilder creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/decompress creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/legacy creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/common creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/deprecated gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c bcolz/carray_ext.c -o build/temp.macosx-10.7-x86_64-3.6/bcolz/carray_ext.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 In file included from bcolz/carray_ext.c:525: In file included from /Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: In file included from /Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816: /Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it by "
^ 1 warning generated. gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c c-blosc/blosc/blosc.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/blosc.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 c-blosc/blosc/blosc.c:874:7: warning: unused variable 'rc' [-Wunused-variable] int rc; ^ c-blosc/blosc/blosc.c:1656:7: warning: unused variable 'rc' [-Wunused-variable] int rc; ^ c-blosc/blosc/blosc.c:2136:7: warning: unused variable 'rc' [-Wunused-variable] int rc; ^ 3 warnings generated. gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c c-blosc/blosc/bitshuffle-generic.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/bitshuffle-generic.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c c-blosc/blosc/shuffle.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/shuffle.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 In file included from c-blosc/blosc/shuffle.c:11: c-blosc/blosc/shuffle-generic.h:32:13: warning: unused function 'shuffle_generic_inline' [-Wunused-function] static void shuffle_generic_inline(const size_t type_size, ^ c-blosc/blosc/shuffle-generic.h:61:13: warning: unused function 'unshuffle_generic_inline' [-Wunused-function] static void unshuffle_generic_inline(const size_t type_size, ^ 2 warnings generated. gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c c-blosc/blosc/fastcopy.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/fastcopy.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 c-blosc/blosc/fastcopy.c:137:30: warning: unused function 'copy_32_bytes_aligned' [-Wunused-function] static inline unsigned char *copy_32_bytes_aligned(unsigned char *out, const unsigned char *from) { ^ c-blosc/blosc/fastcopy.c:270:30: warning: unused function 'chunk_memcpy_32' [-Wunused-function] static inline unsigned char *chunk_memcpy_32(unsigned char *out, const unsigned char *from, unsigned len) { ^ c-blosc/blosc/fastcopy.c:294:30: warning: unused function 'chunk_memcpy_32_unrolled' [-Wunused-function] static inline unsigned char *chunk_memcpy_32_unrolled(unsigned char *out, const unsigned char *from, unsigned len) { ^ c-blosc/blosc/fastcopy.c:402:30: warning: unused function 'chunk_memcpy_aligned' [-Wunused-function] static inline unsigned char *chunk_memcpy_aligned(unsigned char *out, const unsigned char *from, unsigned len) { ^ 4 warnings generated. gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c c-blosc/blosc/blosclz.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/blosclz.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 c-blosc/blosc/blosclz.c:148:35: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare] if (_mm256_movemask_epi8(cmp) != 0xFFFFFFFF) { ~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~ c-blosc/blosc/blosclz.c:219:35: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare] if (_mm256_movemask_epi8(cmp) != 0xFFFFFFFF) { ~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~ c-blosc/blosc/blosclz.c:82:24: warning: unused function 'get_run' [-Wunused-function] static inline uint8_t *get_run(uint8_t *ip, const uint8_t *ip_bound, const uint8_t *ref) { ^ c-blosc/blosc/blosclz.c:110:24: warning: unused function 'get_run_16' [-Wunused-function] static inline uint8_t *get_run_16(uint8_t *ip, const uint8_t *ip_bound, const uint8_t *ref) { ^ 4 warnings generated. gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c c-blosc/blosc/shuffle-generic.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/shuffle-generic.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c c-blosc/internal-complibs/lz4-1.8.1.2/lz4hc.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/lz4-1.8.1.2/lz4hc.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c c-blosc/internal-complibs/lz4-1.8.1.2/lz4.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/lz4-1.8.1.2/lz4.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c c-blosc/internal-complibs/snappy-1.1.1/snappy-stubs-internal.cc -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/snappy-1.1.1/snappy-stubs-internal.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2 warning: include path for stdlibc++ headers not found; pass '-stdlib=libc++' on the command line to use the libc++ standard library instead [-Wstdlibcxx-not-found] c-blosc/internal-complibs/snappy-1.1.1/snappy-stubs-internal.cc:29:10: fatal error: 'algorithm' file not found #include ^~~~~~~~~~~ 1 warning and 1 error generated. error: command 'gcc' failed with exit status 1 ---------------------------------------- ERROR: Command errored out with exit status 1: /Users/david/anaconda3/envs/catalyst/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/d4/_6xpn13j2t762s_81w8854f00000gp/T/pip-install-9p45ypdq/bcolz/setup.py'"'"'; file='"'"'/private/var/folders/d4/_6xpn13j2t762s_81w8854f00000gp/T/pip-install-9p45ypdq/bcolz/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /private/var/folders/d4/_6xpn13j2t762s_81w8854f00000gp/T/pip-record-flf9o_wl/install-record.txt --single-version-externally-managed --compile Check the logs for full command output.

Here is how you can reproduce this issue on your machine: Follow instructions on your web site

  1. conda create --name catalyst python=3.6 scipy zlib
  2. pip install enigma-catalyst matplotlib

...

What steps have you taken to resolve this already?

Based on web research:

  • Updated numpy to 1.16.0

  • Installed new headers

    sudo installer -pkg /Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_macOS_10.14.pkg - target /

  • Installed GCC from Conda

As far as I can determine, none of these actions made any difference. I note catalyst incorporates Zipline, which I have not been able to use successfully on my system. I wonder if there is any connection?

Thanks. David Wilt

DLWCMD avatar Nov 13 '19 01:11 DLWCMD

Same issue here! Is this project still actively maintained? Last update on master is Nov 11, 2018?!

kristian avatar Jan 06 '20 16:01 kristian