JSCIPOpt
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scipopt
fatal error
when I run scip like this in my mac pro
java -cp scip.jar:examples.jar Linear
I've found that an exception has been threw in my terminal
#
# A fatal error has been detected by the Java Runtime Environment:
#
# SIGSEGV (0xb) at pc=0x0000000128d7a241, pid=19480, tid=0x0000000000001c03
#
# JRE version: Java(TM) SE Runtime Environment (8.0_121-b13) (build 1.8.0_121-b13)
# Java VM: Java HotSpot(TM) 64-Bit Server VM (25.121-b13 mixed mode bsd-amd64 compressed oops)
# Problematic frame:
# C [libawt_lwawt.dylib+0x46241] JNI_OnLoad+0x91
#
# Failed to write core dump. Core dumps have been disabled. To enable core dumping, try "ulimit -c unlimited" before starting Java again
#
# An error report file with more information is saved as:
# /Users/muzhe/Documents/temp/JSCIPOpt/build/Release/hs_err_pid19480.log
#
# If you would like to submit a bug report, please visit:
# http://bugreport.java.com/bugreport/crash.jsp
# The crash happened outside the Java Virtual Machine in native code.
# See problematic frame for where to report the bug.
#
Abort trap: 6
the internal exception
Internal exceptions (2 events):
Event: 0.030 Thread 0x00007faad780c800 Exception <a 'java/lang/NoSuchMethodError': Method sun.misc.Unsafe.defineClass(Ljava/lang/String;[BII)Ljava/lang/Class; name or signature does not match> (0x000000076ab07ca8) thrown at [/Users/java_re/workspace/8-2-build-macosx-x86_64/jdk8u121/8372/hotspo
Event: 0.030 Thread 0x00007faad780c800 Exception <a 'java/lang/NoSuchMethodError': Method sun.misc.Unsafe.prefetchRead(Ljava/lang/Object;J)V name or signature does not match> (0x000000076ab07f90) thrown at [/Users/java_re/workspace/8-2-build-macosx-x86_64/jdk8u121/8372/hotspot/src/share/vm/pri
Stack: [0x00007000082d8000,0x00007000083d8000], sp=0x00007000083d7480, free space=1021k
Native frames: (J=compiled Java code, j=interpreted, Vv=VM code, C=native code)
C [liblwawt.dylib+0xe17b] JNI_OnLoad+0x91
C [libjava.dylib+0x1443] Java_java_lang_ClassLoader_00024NativeLibrary_load+0xcf
j java.lang.ClassLoader$NativeLibrary.load(Ljava/lang/String;)V+0
j java.lang.ClassLoader.loadLibrary1(Ljava/lang/Class;Ljava/io/File;)Z+302
j java.lang.ClassLoader.loadLibrary0(Ljava/lang/Class;Ljava/io/File;)Z+2
j java.lang.ClassLoader.loadLibrary(Ljava/lang/Class;Ljava/lang/String;Z)V+268
j java.lang.Runtime.loadLibrary0(Ljava/lang/Class;Ljava/lang/String;)V+54
j java.lang.System.loadLibrary(Ljava/lang/String;)V+7
j Linear.main([Ljava/lang/String;)V+2
v ~StubRoutines::call_stub
V [libjvm.dylib+0x2dc898] JavaCalls::call_helper(JavaValue*, methodHandle*, JavaCallArguments*, Thread*)+0x22a
V [libjvm.dylib+0x2dc668] JavaCalls::call(JavaValue*, methodHandle, JavaCallArguments*, Thread*)+0x28
V [libjvm.dylib+0x31004e] jni_invoke_static(JNIEnv_*, JavaValue*, _jobject*, JNICallType, _jmethodID*, JNI_ArgumentPusher*, Thread*)+0xe6
V [libjvm.dylib+0x3091e9] jni_CallStaticVoidMethod+0x10b
C [java+0x30fe] JavaMain+0x91d
C [libsystem_pthread.dylib+0x39af] _pthread_body+0xb4
C [libsystem_pthread.dylib+0x38fb] _pthread_body+0x0
C [libsystem_pthread.dylib+0x3101] thread_start+0xd
Java frames: (J=compiled Java code, j=interpreted, Vv=VM code)
j java.lang.ClassLoader$NativeLibrary.load(Ljava/lang/String;)V+0
j java.lang.ClassLoader.loadLibrary1(Ljava/lang/Class;Ljava/io/File;)Z+302
j java.lang.ClassLoader.loadLibrary0(Ljava/lang/Class;Ljava/io/File;)Z+2
j java.lang.ClassLoader.loadLibrary(Ljava/lang/Class;Ljava/lang/String;Z)V+268
j java.lang.Runtime.loadLibrary0(Ljava/lang/Class;Ljava/lang/String;)V+54
j java.lang.System.loadLibrary(Ljava/lang/String;)V+7
j Linear.main([Ljava/lang/String;)V+2
v ~StubRoutines::call_stub
please help me!
I need more information in order to help you. Can you write, step by step, how you compiled the SCIP Optimization Suite and JSCIPOpt? Please list all executed commands. Which C compiler did you use? I am guessing that you are compiling everything on a MAC, right?
cmake .. -DSCIP_DIR=/Users/muzhe/Downloads/scipoptsuite-5.0.0/build
-- The C compiler identification is AppleClang 8.1.0.8020042
-- The CXX compiler identification is AppleClang 8.1.0.8020042
-- Check for working C compiler: /Library/Developer/CommandLineTools/usr/bin/cc
-- Check for working C compiler: /Library/Developer/CommandLineTools/usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /Library/Developer/CommandLineTools/usr/bin/c++
-- Check for working CXX compiler: /Library/Developer/CommandLineTools/usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found JNI: /Library/Java/JavaVirtualMachines/jdk1.8.0_121.jdk/Contents/Home/jre/lib/libjawt.dylib
-- Found Java: /Library/Java/JavaVirtualMachines/jdk1.8.0_121.jdk/Contents/Home/bin/java (found version "1.8.0.121")
-- Found SWIG: /usr/local/bin/swig (found version "3.0.12")
-- Configuring done
CMake Warning (dev):
Policy CMP0042 is not set: MACOSX_RPATH is enabled by default. Run "cmake
--help-policy CMP0042" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
MACOSX_RPATH is not specified for the following targets:
jscip
This warning is for project developers. Use -Wno-dev to suppress it.
-- Generating done
-- Build files have been written to: /Users/muzhe/Downloads/JSCIPOpt/build
make
Scanning dependencies of target scipjar
[ 10%] Building Java objects for scipjar.jar
[ 20%] Generating Release/CMakeFiles/scipjar.dir/java_class_filelist
[ 30%] Creating Java archive scip.jar
[ 40%] Built target scipjar
Scanning dependencies of target examples
[ 50%] Building Java objects for examples.jar
[ 60%] Generating Release/CMakeFiles/examples.dir/java_class_filelist
[ 70%] Creating Java archive examples.jar
[ 70%] Built target examples
Scanning dependencies of target jscip
[ 80%] Building C object CMakeFiles/jscip.dir/src/scipjni_wrap.c.o
[ 90%] Linking C shared library Release/libjscip.dylib
ld: warning: directory not found for option '-L/Users/muzhe/Downloads/JSCIPOpt/lib'
[100%] Built target jscip
java -cp scip.jar:examples.jar "Linear"
#
# A fatal error has been detected by the Java Runtime Environment:
#
# SIGSEGV (0xb) at pc=0x0000000123570241, pid=61158, tid=0x0000000000001c03
#
# JRE version: Java(TM) SE Runtime Environment (8.0_121-b13) (build 1.8.0_121-b13)
# Java VM: Java HotSpot(TM) 64-Bit Server VM (25.121-b13 mixed mode bsd-amd64 compressed oops)
# Problematic frame:
# C [libawt_lwawt.dylib+0x46241] JNI_OnLoad+0x91
#
# Failed to write core dump. Core dumps have been disabled. To enable core dumping, try "ulimit -c unlimited" before starting Java again
#
# An error report file with more information is saved as:
# /Users/muzhe/Downloads/JSCIPOpt/build/Release/hs_err_pid61158.log
#
# If you would like to submit a bug report, please visit:
# http://bugreport.java.com/bugreport/crash.jsp
# The crash happened outside the Java Virtual Machine in native code.
# See problematic frame for where to report the bug.
#
Abort trap: 6
Configured with: --prefix=/Library/Developer/CommandLineTools/usr --with-gxx-include-dir=/usr/include/c++/4.2.1 Apple LLVM version 8.1.0 (clang-802.0.42) Target: x86_64-apple-darwin16.5.0 Thread model: posix InstalledDir: /Library/Developer/CommandLineTools/usr/bin
Configured with: --prefix=/Library/Developer/CommandLineTools/usr --with-gxx-include-dir=/usr/include/c++/4.2.1 Apple LLVM version 8.1.0 (clang-802.0.42) Target: x86_64-apple-darwin16.5.0 Thread model: posix InstalledDir: /Library/Developer/CommandLineTools/usr/bin
Hi, I am currently on vacation and will be back on January 4th.
Regards
Am 27.12.2017 06:13 schrieb "lmxiaonuo" [email protected]:
another problem, how can I get dual solution from JSCIPOpt
— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/SCIP-Interfaces/JSCIPOpt/issues/10#issuecomment-354053617, or mute the thread https://github.com/notifications/unsubscribe-auth/AJChB90lwuaFhkLNdgxLBWWcmzPUc5pKks5tEdHpgaJpZM4Q8gCo .
No, I couldn't reproduce this bug so far. @mcarreiro, do you also compile JSCIPOpt on a MAC?
@mcarreiro, can you check whether one of the following java commands work?
java -classpath "scip.jar:examples.jar" "Linear"
java -Djava.class.path=scip.jar:examples.jar "Linear"
Thanks!
java -classpath "scip.jar:examples.jar" "Linear" java -Djava.class.path=scip.jar:examples.jar "Linear"
Result: A fatal error has been detected by the Java Runtime Environment:
SIGSEGV (0xb) at pc=0x000000011d78e309, pid=4709, tid=0x0000000000001c03
JRE version: Java(TM) SE Runtime Environment (8.0_231-b11) (build 1.8.0_231-b11) Java VM: Java HotSpot(TM) 64-Bit Server VM (25.231-b11 mixed mode bsd-amd64 compressed oops) Problematic frame: C [libawt_lwawt.dylib+0x48309] JNI_OnLoad+0x91
Failed to write core dump. Core dumps have been disabled. To enable core dumping, try "ulimit -c unlimited" before starting Java again
An error report file with more information is saved as: /Users/didi/Downloads/DownloadsLibrary/JSCIPOpt-master/build/Release/hs_err_pid4709.log If you would like to submit a bug report, please visit: http://bugreport.java.com/bugreport/crash.jsp The crash happened outside the Java Virtual Machine in native code. See problematic frame for where to report the bug.
@mueldgog I also encountered such issue, my jdk version is 1.8.0_211-b12. However, after changing jdk to v10.0.2, I could run 'java -cp scip.jar:examples.jar Linear' successfully. Above errors happened on jdk versions are 1.8.0_231, 1.8.0_121 and 1.8.0_211, not sure if it is a issue about jdk
Hi, I have the same issue. I also compile JSCIPOpt on Mac Pro.
A fatal error has been detected by the Java Runtime Environment:
SIGSEGV (0xb) at pc=0x00000001160dd369, pid=13742, tid=0x0000000000000d03
JRE version: Java(TM) SE Runtime Environment (8.0_171-b11) (build 1.8.0_171-b11) Java VM: Java HotSpot(TM) 64-Bit Server VM (25.171-b11 mixed mode bsd-amd64 compressed oops) Problematic frame: C [libawt_lwawt.dylib+0x47369] JNI_OnLoad+0x91
Failed to write core dump. Core dumps have been disabled. To enable core dumping, try "ulimit -c unlimited" before starting Java again
An error report file with more information is saved as: /Users/mengxiangzhe/IdeaProjects/wtf-route/algo/hs_err_pid13742.log
If you would like to submit a bug report, please visit: http://bugreport.java.com/bugreport/crash.jsp The crash happened outside the Java Virtual Machine in native code. See problematic frame for where to report the bug.
