ripser.py
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Issue with installation. Kindly help.
I am getting the following error when installing the ripser on anaconda 3. Kindly let me know the ways to fix it.
(base) PS C:\Users\pc> pip install ripser
Collecting ripser
Using cached ripser-0.5.2.tar.gz (80 kB)
Requirement already satisfied: Cython in c:\programdata\anaconda3\lib\site-packages (from ripser) (0.29.21)
Requirement already satisfied: numpy in c:\programdata\anaconda3\lib\site-packages (from ripser) (1.18.5)
Requirement already satisfied: scipy in c:\programdata\anaconda3\lib\site-packages (from ripser) (1.5.0)
Requirement already satisfied: scikit-learn in c:\programdata\anaconda3\lib\site-packages (from ripser) (0.23.1)
Requirement already satisfied: persim in c:\programdata\anaconda3\lib\site-packages (from ripser) (0.1.3)
Requirement already satisfied: joblib>=0.11 in c:\programdata\anaconda3\lib\site-packages (from scikit-learn->ripser) (0.16.0)
Requirement already satisfied: threadpoolctl>=2.0.0 in c:\programdata\anaconda3\lib\site-packages (from scikit-learn->ripser) (2.1.0)
Requirement already satisfied: matplotlib in c:\programdata\anaconda3\lib\site-packages (from persim->ripser) (3.2.2)
Requirement already satisfied: hopcroftkarp in c:\programdata\anaconda3\lib\site-packages (from persim->ripser) (1.2.5)
Requirement already satisfied: cycler>=0.10 in c:\programdata\anaconda3\lib\site-packages (from matplotlib->persim->ripser) (0.10.0)
Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in c:\programdata\anaconda3\lib\site-packages (from matplotlib->persim->ripser) (2.4.7)
Requirement already satisfied: kiwisolver>=1.0.1 in c:\programdata\anaconda3\lib\site-packages (from matplotlib->persim->ripser) (1.2.0)
Requirement already satisfied: python-dateutil>=2.1 in c:\programdata\anaconda3\lib\site-packages (from matplotlib->persim->ripser) (2.8.1)
Requirement already satisfied: six in c:\programdata\anaconda3\lib\site-packages (from cycler>=0.10->matplotlib->persim->ripser) (1.15.0)
Building wheels for collected packages: ripser
Building wheel for ripser (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: 'C:\ProgramData\Anaconda3\python.exe' -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\\Users\\pc\\AppData\\Local\\Temp\\pip-install-en11byy8\\ripser\\setup.py'"'"'; __file__='"'"'C:\\Users\\pc\\AppData\\Local\\Temp\\pip-install-en11byy8\\ripser\\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d 'C:\Users\pc\AppData\Local\Temp\pip-wheel-wozshgka'
cwd: C:\Users\pc\AppData\Local\Temp\pip-install-en11byy8\ripser\
Complete output (12 lines):
running bdist_wheel
running build
running build_py
creating build
creating build\lib.win-amd64-3.8
creating build\lib.win-amd64-3.8\ripser
copying ripser\ripser.py -> build\lib.win-amd64-3.8\ripser
copying ripser\_version.py -> build\lib.win-amd64-3.8\ripser
copying ripser\__init__.py -> build\lib.win-amd64-3.8\ripser
running build_ext
building 'pyRipser' extension
error: Microsoft Visual C++ 14.0 is required. Get it with "Build Tools for Visual Studio": https://visualstudio.microsoft.com/downloads/
----------------------------------------
ERROR: Failed building wheel for ripser
Running setup.py clean for ripser
Failed to build ripser
Installing collected packages: ripser
Running setup.py install for ripser ... error
ERROR: Command errored out with exit status 1:
command: 'C:\ProgramData\Anaconda3\python.exe' -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\\Users\\pc\\AppData\\Local\\Temp\\pip-install-en11byy8\\ripser\\setup.py'"'"'; __file__='"'"'C:\\Users\\pc\\AppData\\Local\\Temp\\pip-install-en11byy8\\ripser\\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record 'C:\Users\pc\AppData\Local\Temp\pip-record-u9s13721\install-record.txt' --single-version-externally-managed --compile --install-headers 'C:\ProgramData\Anaconda3\Include\ripser'
cwd: C:\Users\pc\AppData\Local\Temp\pip-install-en11byy8\ripser\
Complete output (12 lines):
running install
running build
running build_py
creating build
creating build\lib.win-amd64-3.8
creating build\lib.win-amd64-3.8\ripser
copying ripser\ripser.py -> build\lib.win-amd64-3.8\ripser
copying ripser\_version.py -> build\lib.win-amd64-3.8\ripser
copying ripser\__init__.py -> build\lib.win-amd64-3.8\ripser
running build_ext
building 'pyRipser' extension
error: Microsoft Visual C++ 14.0 is required. Get it with "Build Tools for Visual Studio": https://visualstudio.microsoft.com/downloads/
----------------------------------------
ERROR: Command errored out with exit status 1: 'C:\ProgramData\Anaconda3\python.exe' -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\\Users\\pc\\AppData\\Local\\Temp\\pip-install-en11byy8\\ripser\\setup.py'"'"'; __file__='"'"'C:\\Users\\pc\\AppData\\Local\\Temp\\pip-install-en11byy8\\ripser\\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record 'C:\Users\pc\AppData\Local\Temp\pip-record-u9s13721\install-record.txt' --single-version-externally-managed --compile --install-headers 'C:\ProgramData\Anaconda3\Include\ripser' Check the logs for full command output.
(base) PS C:\Users\pc>
You see the error: Microsoft Visual C++ 14.0 is required. Get it with "Build Tools for Visual Studio
in there?
Have you tried installing the Build Tools for Visual Studio
?
Hello @sohailiqbal, What version of Python are you using? I just uploaded the Windows binaries for Python 3.6 and 3.7 to pypi, so you shouldn't have to build it from source if you're using one of those versions. Try pip install again and let me know if the issue persists. Actually, I'm curious to know if this doesn't work if you have Python 3.6 or 3.7, so please let me know. Regardless, as @sauln said, you can build from source if you have Build Tools for Visual Studio, which are freely available online
Dear Chris Tralie,
I am sorry for the late reply. The problem is resolved with python 3.7.
In fact I was using python 3.8, I installed Build Tools for Visual Studio but that did not work either in this case.
Thanks for your help.
Best, Sohail
On Wed, Jul 29, 2020 at 1:01 AM Chris Tralie [email protected] wrote:
Hello @sohailiqbal https://github.com/sohailiqbal, What version of Python are you using? I just uploaded the Windows binaries for Python 3.6 and 3.7 to pypi, so you shouldn't have to build it from source if you're using one of those versions. Try pip install again and let me know if the issue persists. Actually, I'm curious to know if this doesn't work if you have Python 3.6 or 3.7, so please let me know. Regardless, as @sauln https://github.com/sauln said, you can build from source if you have Build Tools for Visual Studio, which are freely available online
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