ValueError: numpy.ndarray size changed, may indicate binary incompatibility. Expected 88 from C header, got 80 from PyObject

[Dwiunzila]

Description

hello everyone i'm trying to build bandstructure using abinit but this error always appears

Way to reproduce

~/Documents/Dwi Unzila/bandstructure/FeO Murni/percobaan 1$ abiopen.py t01o_DS2_GSR.nc --expose -sns=talk

Version information

numpy version: 1.19.2 abinit : 9.6.2

Traceback (most recent call last): File "/home/komputasi6/.local/bin/abiopen.py", line 17, in from abipy import abilab File "/home/komputasi6/.local/lib/python3.7/site-packages/abipy/init.py", line 18, in from abipy.core import release File "/home/komputasi6/.local/lib/python3.7/site-packages/abipy/core/init.py", line 3, in from .kpoints import * File "/home/komputasi6/.local/lib/python3.7/site-packages/abipy/core/kpoints.py", line 15, in from pymatgen.core.lattice import Lattice File "/home/komputasi6/.local/lib/python3.7/site-packages/pymatgen/core/init.py", line 20, in from .lattice import Lattice # noqa File "/home/komputasi6/.local/lib/python3.7/site-packages/pymatgen/core/lattice.py", line 22, in from pymatgen.util.coord import pbc_shortest_vectors File "/home/komputasi6/.local/lib/python3.7/site-packages/pymatgen/util/coord.py", line 17, in from . import coord_cython as cuc File "pymatgen/util/coord_cython.pyx", line 1, in init pymatgen.util.coord_cython ValueError: numpy.ndarray size changed, may indicate binary incompatibility. Expected 88 from C header, got 80 from PyObject

[mkcor]

Hi @Dwiunzila,

Where does scikit-image come into play? Did you mean to post under https://github.com/abinit/abinit/?

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[stefanv]

Looks like a numpy version mismatch. Should be fixed by installing into clean env.