pymol-open-source
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schrodinger
Plugins not showing
Hi,
The default APBS Electrostatics and Lighting Settings plugins are showing and working, but the Legacy Plugin menu entry is empty. If I install a new plugin via the plugin manager it does not show up anywhere.
APBS Electrostatics and Lighting Settings plugins are installed under
~/Programs/miniconda3/envs/pymol/lib/python3.11/site-packages/pymol/pymol_path/data/startup
whereas the test plugin is installed under
~/Programs/miniconda3/envs/pymol/lib/python3.11/site-packages/pmg_tk/startup
Do I need specific permissions for this to show up? Or is there another issue?
Thanks/Evert
Environment
PyMOL Version: 3.1.0, installed via conda
OS: WSL2 Debian 12
conda list
# packages in environment at /home/evehom/Programs/miniconda3/envs/pymol:
#
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 2_gnu conda-forge
alsa-lib 1.2.13 hb9d3cd8_0 conda-forge
attr 2.5.1 h166bdaf_1 conda-forge
blosc 1.21.6 he440d0b_1 conda-forge
bzip2 1.0.8 h4bc722e_7 conda-forge
c-ares 1.34.4 hb9d3cd8_0 conda-forge
ca-certificates 2025.1.31 hbcca054_0 conda-forge
cairo 1.18.2 h3394656_1 conda-forge
cyrus-sasl 2.1.27 h54b06d7_7 conda-forge
dbus 1.13.6 h5008d03_3 conda-forge
expat 2.6.4 h5888daf_0 conda-forge
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
font-ttf-inconsolata 3.000 h77eed37_0 conda-forge
font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge
font-ttf-ubuntu 0.83 h77eed37_3 conda-forge
fontconfig 2.15.0 h7e30c49_1 conda-forge
fonts-conda-ecosystem 1 0 conda-forge
fonts-conda-forge 1 0 conda-forge
freetype 2.12.1 h267a509_2 conda-forge
gettext 0.23.1 h5888daf_0 conda-forge
gettext-tools 0.23.1 h5888daf_0 conda-forge
glew 2.1.0 h9c3ff4c_2 conda-forge
glib 2.82.2 h07242d1_1 conda-forge
glib-tools 2.82.2 h4833e2c_1 conda-forge
glm 0.9.9.8 h00ab1b0_0 conda-forge
graphite2 1.3.13 h59595ed_1003 conda-forge
gst-plugins-base 1.24.7 h0a52356_0 conda-forge
gstreamer 1.24.7 hf3bb09a_0 conda-forge
harfbuzz 10.2.0 h4bba637_0 conda-forge
hdf4 4.2.15 h2a13503_7 conda-forge
hdf5 1.14.4 nompi_h2d575fe_105 conda-forge
icu 75.1 he02047a_0 conda-forge
keyutils 1.6.1 h166bdaf_0 conda-forge
krb5 1.21.3 h659f571_0 conda-forge
lame 3.100 h166bdaf_1003 conda-forge
ld_impl_linux-64 2.43 h712a8e2_2 conda-forge
libaec 1.1.3 h59595ed_0 conda-forge
libasprintf 0.23.1 h8e693c7_0 conda-forge
libasprintf-devel 0.23.1 h8e693c7_0 conda-forge
libblas 3.9.0 28_h59b9bed_openblas conda-forge
libcap 2.71 h39aace5_0 conda-forge
libcblas 3.9.0 28_he106b2a_openblas conda-forge
libclang-cpp19.1 19.1.7 default_hb5137d0_1 conda-forge
libclang13 19.1.7 default_h9c6a7e4_1 conda-forge
libcups 2.3.3 h4637d8d_4 conda-forge
libcurl 8.12.1 h332b0f4_0 conda-forge
libdrm 2.4.124 hb9d3cd8_0 conda-forge
libedit 3.1.20250104 pl5321h7949ede_0 conda-forge
libegl 1.7.0 ha4b6fd6_2 conda-forge
libev 4.33 hd590300_2 conda-forge
libevent 2.1.12 hf998b51_1 conda-forge
libexpat 2.6.4 h5888daf_0 conda-forge
libffi 3.4.6 h2dba641_0 conda-forge
libflac 1.4.3 h59595ed_0 conda-forge
libgcc 14.2.0 h77fa898_1 conda-forge
libgcc-ng 14.2.0 h69a702a_1 conda-forge
libgcrypt-lib 1.11.0 hb9d3cd8_2 conda-forge
libgettextpo 0.23.1 h5888daf_0 conda-forge
libgettextpo-devel 0.23.1 h5888daf_0 conda-forge
libgfortran 14.2.0 h69a702a_1 conda-forge
libgfortran5 14.2.0 hd5240d6_1 conda-forge
libgl 1.7.0 ha4b6fd6_2 conda-forge
libglib 2.82.2 h2ff4ddf_1 conda-forge
libglu 9.0.3 h03adeef_0 conda-forge
libglvnd 1.7.0 ha4b6fd6_2 conda-forge
libglx 1.7.0 ha4b6fd6_2 conda-forge
libgomp 14.2.0 h77fa898_1 conda-forge
libgpg-error 1.51 hbd13f7d_1 conda-forge
libiconv 1.17 hd590300_2 conda-forge
libjpeg-turbo 3.0.0 hd590300_1 conda-forge
liblapack 3.9.0 28_h7ac8fdf_openblas conda-forge
libllvm19 19.1.7 ha7bfdaf_1 conda-forge
liblzma 5.6.4 hb9d3cd8_0 conda-forge
libnetcdf 4.9.2 nompi_h5ddbaa4_116 conda-forge
libnghttp2 1.64.0 h161d5f1_0 conda-forge
libnsl 2.0.1 hd590300_0 conda-forge
libntlm 1.8 hb9d3cd8_0 conda-forge
libogg 1.3.5 h4ab18f5_0 conda-forge
libopenblas 0.3.28 pthreads_h94d23a6_1 conda-forge
libopus 1.3.1 h7f98852_1 conda-forge
libpciaccess 0.18 hd590300_0 conda-forge
libpng 1.6.46 h943b412_0 conda-forge
libpq 17.3 h27ae623_0 conda-forge
libsndfile 1.2.2 hc60ed4a_1 conda-forge
libsqlite 3.48.0 hee588c1_1 conda-forge
libssh2 1.11.1 hf672d98_0 conda-forge
libstdcxx 14.2.0 hc0a3c3a_1 conda-forge
libstdcxx-ng 14.2.0 h4852527_1 conda-forge
libsystemd0 257.3 h3dc2cb9_0 conda-forge
libuuid 2.38.1 h0b41bf4_0 conda-forge
libvorbis 1.3.7 h9c3ff4c_0 conda-forge
libxcb 1.17.0 h8a09558_0 conda-forge
libxcrypt 4.4.36 hd590300_1 conda-forge
libxkbcommon 1.8.0 hc4a0caf_0 conda-forge
libxml2 2.13.5 h8d12d68_1 conda-forge
libzip 1.11.2 h6991a6a_0 conda-forge
libzlib 1.3.1 hb9d3cd8_2 conda-forge
lz4-c 1.10.0 h5888daf_1 conda-forge
mpg123 1.32.9 hc50e24c_0 conda-forge
mysql-common 9.0.1 h266115a_4 conda-forge
mysql-libs 9.0.1 he0572af_4 conda-forge
ncurses 6.5 h2d0b736_3 conda-forge
nspr 4.36 h5888daf_0 conda-forge
nss 3.108 h159eef7_0 conda-forge
numpy 2.2.3 py311h5d046bc_0 conda-forge
openldap 2.6.9 he970967_0 conda-forge
openssl 3.4.1 h7b32b05_0 conda-forge
packaging 24.2 pyhd8ed1ab_2 conda-forge
pcre2 10.44 hba22ea6_2 conda-forge
pip 25.0.1 pyh8b19718_0 conda-forge
pixman 0.44.2 h29eaf8c_0 conda-forge
ply 3.11 pyhd8ed1ab_3 conda-forge
pmw 2.0.1 py311h38be061_1008 conda-forge
pthread-stubs 0.4 hb9d3cd8_1002 conda-forge
pulseaudio-client 17.0 hb77b528_0 conda-forge
pymol-open-source 3.1.0 py311h392c68e_0 conda-forge
pyqt 5.15.9 py311hf0fb5b6_5 conda-forge
pyqt5-sip 12.12.2 py311hb755f60_5 conda-forge
python 3.11.11 h9e4cc4f_1_cpython conda-forge
python_abi 3.11 5_cp311 conda-forge
qt-main 5.15.15 hc3cb62f_2 conda-forge
readline 8.2 h8228510_1 conda-forge
setuptools 75.8.0 pyhff2d567_0 conda-forge
sip 6.7.12 py311hb755f60_0 conda-forge
snappy 1.2.1 h8bd8927_1 conda-forge
tk 8.6.13 noxft_h4845f30_101 conda-forge
toml 0.10.2 pyhd8ed1ab_1 conda-forge
tomli 2.2.1 pyhd8ed1ab_1 conda-forge
tzdata 2025a h78e105d_0 conda-forge
wheel 0.45.1 pyhd8ed1ab_1 conda-forge
xcb-util 0.4.1 hb711507_2 conda-forge
xcb-util-image 0.4.0 hb711507_2 conda-forge
xcb-util-keysyms 0.4.1 hb711507_0 conda-forge
xcb-util-renderutil 0.3.10 hb711507_0 conda-forge
xcb-util-wm 0.4.2 hb711507_0 conda-forge
xkeyboard-config 2.43 hb9d3cd8_0 conda-forge
xorg-libice 1.1.2 hb9d3cd8_0 conda-forge
xorg-libsm 1.2.5 he73a12e_0 conda-forge
xorg-libx11 1.8.11 h4f16b4b_0 conda-forge
xorg-libxau 1.0.12 hb9d3cd8_0 conda-forge
xorg-libxdamage 1.1.6 hb9d3cd8_0 conda-forge
xorg-libxdmcp 1.1.5 hb9d3cd8_0 conda-forge
xorg-libxext 1.3.6 hb9d3cd8_0 conda-forge
xorg-libxfixes 6.0.1 hb9d3cd8_0 conda-forge
xorg-libxrender 0.9.12 hb9d3cd8_0 conda-forge
xorg-libxxf86vm 1.1.6 hb9d3cd8_0 conda-forge
zlib 1.3.1 hb9d3cd8_2 conda-forge
zstd 1.5.6 ha6fb4c9_0 conda-forge
