Can I use only GAPLESS to fill the gap?

[XXH123a]

Dear Developer Excuse me, I already have a genome at the chromosome level, so I just want to try filling gap with GAPLESS. Do you think it's okay?

[schmeing]

In the gapless.py there is a parameter org_scaffold_trust that is by default set to "basic". If you set it to "blind", it should only fill gaps. I did not pull this parameter through to the program parameter level, yet. I will do this, but currently I am changing flats, so it will likely not happen before the end of the month. Thus, if you want it fast you have to change it directly in the python file.

[XXH123a]

Thank you for your enthusiastic guidance. I will immediately give it a try and compare it with LR_ Gapcloser, TGS-gapcloser results.

[xizhesun]

@XXH123a Hi, could you share the compare result?

[xiekunwhy]

also just want to use gapless to fill gap only.